[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7334	7964089	NM_014871	PAN2		PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 7334.
Getting list of p-values for id 7334.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7964089	8142087	NM_020725	ATXN7L1	0.658440	2.284554e-14	3.958446e-10	3.958446e-10
2	7964089	7923917	NM_005449	FAIM3	0.644233	1.221514e-13	2.116517e-9	1.058258e-9
3	7964089	8041763	NM_005400	PRKCE	0.642947	1.415689e-13	2.452964e-9	8.176547e-10
4	7964089	8134470	NM_003496	TRRAP	0.631197	5.275320e-13	9.140547e-9	2.285137e-9
5	7964089	7986049	NM_022769	CRTC3	0.624445	1.095753e-12	1.898611e-8	3.797223e-9
6	7964089	7986569	NR_002824	HERC2P2	0.622365	1.367692e-12	2.369800e-8	3.949666e-9
7	7964089	7911539	NM_001039577	CCNL2	0.622152	1.398874e-12	2.423828e-8	3.462612e-9
8	7964089	8074647	NM_058004	PI4KA	0.610160	4.860642e-12	8.422035e-8	1.052754e-8
9	7964089	8039909	NM_001039577	CCNL2	0.609649	5.119834e-12	8.871137e-8	9.856819e-9
10	7964089	7960544	NM_199245	VAMP1	0.607849	6.142295e-12	1.064275e-7	1.064275e-8
11	7964089	8140196	NM_001025202	STAG3L2	0.604611	8.499445e-12	1.472699e-7	1.338817e-8
12	7964089	8173009	NM_015107	PHF8	0.599213	1.448846e-11	2.510415e-7	2.092012e-8
13	7964089	7984364	NM_005902	SMAD3	0.597727	1.674989e-11	2.902253e-7	2.232502e-8
14	7964089	8025697	NM_012218	ILF3	0.597204	1.762457e-11	3.053809e-7	2.181292e-8
15	7964089	8041995	NM_003128	SPTBN1	0.595191	2.141978e-11	3.711406e-7	2.474271e-8
16	7964089	8139977	NM_001013739	STAG3L3	0.595078	2.165336e-11	3.751878e-7	2.344924e-8
17	7964089	8085431	NM_024923	NUP210	0.592385	2.804638e-11	4.859596e-7	2.858586e-8
18	7964089	8062623	NM_002660	PLCG1	0.592151	2.868114e-11	4.969581e-7	2.760878e-8
19	7964089	8133549	NM_001003795	GTF2IRD2B	0.589105	3.830985e-11	6.637948e-7	3.493657e-8
20	7964089	8011141	NM_006445	PRPF8	0.588996	3.870630e-11	6.706640e-7	3.353320e-8
21	7964089	8174692	NM_145799	SEPT6	0.587601	4.414681e-11	7.649317e-7	3.642532e-8
22	7964089	8084717	NM_173216	ST6GAL1	0.585055	5.603599e-11	9.709356e-7	4.413344e-8
23	7964089	7944223	NM_005933	MLL	0.583356	6.562498e-11	1.137084e-6	4.943844e-8
24	7964089	7905754	NM_020452	ATP8B2	0.583018	6.770774e-11	1.173172e-6	4.888217e-8
25	7964089	8054254	NM_002285	AFF3	0.582531	7.083271e-11	1.227318e-6	4.909273e-8
26	7964089	8158317	NM_001130438	SPTAN1	0.581630	7.697354e-11	1.333721e-6	5.129695e-8
27	7964089	7924636	NM_014698	TMEM63A	0.580923	8.214671e-11	1.423356e-6	5.271689e-8
28	7964089	7949104	NM_001098671	RASGRP2	0.580616	8.449946e-11	1.464122e-6	5.229008e-8
29	7964089	7959995	NM_015409	EP400	0.579417	9.431744e-11	1.634238e-6	5.635304e-8
30	7964089	8104378	NM_006999	PAPD7	0.576792	1.197928e-10	2.075650e-6	6.918832e-8
31	7964089	8133610	NM_001013739	STAG3L3	0.576403	1.240906e-10	2.150118e-6	6.935865e-8
32	7964089	8077376	NM_001099952	ITPR1	0.574877	1.424276e-10	2.467843e-6	7.712011e-8
33	7964089	8128138	NM_014611	MDN1	0.573643	1.591362e-10	2.757353e-6	8.355616e-8
34	7964089	8079037	NM_001042646	TRAK1	0.573538	1.606328e-10	2.783285e-6	8.186133e-8
35	7964089	7999614	NM_006985	NPIP	0.572651	1.739222e-10	3.013550e-6	8.610144e-8
36	7964089	8031913	NM_005762	TRIM28	0.571608	1.908852e-10	3.307467e-6	9.187409e-8
37	7964089	7956046	NM_201444	DGKA	0.570834	2.044977e-10	3.543331e-6	9.576571e-8
38	7964089	7994576	NR_002939	RUNDC2C	0.570581	2.091406e-10	3.623780e-6	9.536263e-8
39	7964089	8140170	NM_173537	GTF2IRD2	0.569463	2.309302e-10	4.001328e-6	1.025981e-7
40	7964089	8128247	NM_021813	BACH2	0.566579	2.976947e-10	5.158155e-6	1.289539e-7
41	7964089	8148149	NM_014943	ZHX2	0.564943	3.434195e-10	5.950429e-6	1.451324e-7
42	7964089	8085665	NM_015150	RFTN1	0.563895	3.762247e-10	6.518846e-6	1.552106e-7
43	7964089	8000284	NM_015044	GGA2	0.563656	3.841146e-10	6.655554e-6	1.547803e-7
44	7964089	7950086	NM_006185	NUMA1	0.562882	4.107457e-10	7.116990e-6	1.617498e-7
45	7964089	7941702	NM_006328	RBM14	0.562012	4.428256e-10	7.672838e-6	1.705075e-7
46	7964089	8061725	NM_015338	ASXL1	0.561572	4.599344e-10	7.969284e-6	1.732453e-7
47	7964089	7918517	NM_024102	WDR77	0.560990	4.835545e-10	8.378549e-6	1.782670e-7
48	7964089	7993478	NM_004996	ABCC1	0.559319	5.580939e-10	9.670094e-6	2.014603e-7
49	7964089	8172827	NM_004187	KDM5C	0.558595	5.936855e-10	1.028679e-5	2.099345e-7
50	7964089	8179750	NM_004640	BAT1	0.556883	6.867941e-10	1.190008e-5	2.380016e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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