[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
594	7944478	NM_024791	PDZD3		PDZ domain containing 3

Fetching correlation data, please wait...
Getting list of correlations for id 594.
Getting list of p-values for id 594.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7944478	8036079	NM_033317	DMKN	0.705458	4.393587e-17	7.612769e-13	7.612769e-13
2	7944478	8110237	NM_133369	UNC5A	0.700981	8.396104e-17	1.454793e-12	7.273965e-13
3	7944478	8027920	NM_014209	ETV2	0.697222	1.433095e-16	2.483123e-12	8.277078e-13
4	7944478	8049670	NM_002081	GPC1	0.691080	3.373155e-16	5.844666e-12	1.461166e-12
5	7944478	7969569	NM_015567	SLITRK5	0.680849	1.340484e-15	2.322656e-11	4.645312e-12
6	7944478	8084929	NM_152672	OSTalpha	0.679749	1.549763e-15	2.685275e-11	4.475458e-12
7	7944478	7937014	AK127642	LOC387720	0.678791	1.757554e-15	3.045314e-11	4.350449e-12
8	7944478	8064894	NM_152611	LRRN4	0.678547	1.814561e-15	3.144090e-11	3.930112e-12
9	7944478	8075211	NM_001007279	RASL10A	0.677822	1.995113e-15	3.456932e-11	3.841036e-12
10	7944478	7976755	NM_207117	SLC25A47	0.675001	2.877840e-15	4.986434e-11	4.986434e-12
11	7944478	7931500	NM_001083909	GPR123	0.674194	3.193250e-15	5.532944e-11	5.029949e-12
12	7944478	7901696	NM_174936	PCSK9	0.674181	3.198543e-15	5.542116e-11	4.618430e-12
13	7944478	8157922	NM_002316	LMX1B	0.671693	4.399112e-15	7.622341e-11	5.863339e-12
14	7944478	8004152	NM_015253	WSCD1	0.670040	5.427607e-15	9.404414e-11	6.717439e-12
15	7944478	8074131	NM_001080420	SHANK3	0.669768	5.618122e-15	9.734520e-11	6.489680e-12
16	7944478	8068496	NM_009586	SIM2	0.667594	7.388446e-15	1.280196e-10	8.001225e-12
17	7944478	8001163	NM_182493	MYLK3	0.665893	9.140599e-15	1.583792e-10	9.316421e-12
18	7944478	8062349	NM_002951	RPN2	-0.664091	1.143286e-14	1.980972e-10	1.100540e-11
19	7944478	8125887	NM_003214	TEAD3	0.663331	1.256024e-14	2.176313e-10	1.145428e-11
20	7944478	8062782	NM_032883	TOX2	0.662718	1.354659e-14	2.347218e-10	1.173609e-11
21	7944478	8163599	NM_015404	DFNB31	0.662661	1.364202e-14	2.363754e-10	1.125597e-11
22	7944478	8163678	NM_198186	ASTN2	0.662496	1.392059e-14	2.412020e-10	1.096373e-11
23	7944478	8062539	NM_080552	SLC32A1	0.662094	1.462757e-14	2.534518e-10	1.101965e-11
24	7944478	7906307	NM_018240	KIRREL	0.661958	1.487365e-14	2.577157e-10	1.073815e-11
25	7944478	7955305	NM_001652	AQP6	0.661654	1.543945e-14	2.675194e-10	1.070078e-11
26	7944478	7922590	AK125993	NCRNA00083	0.661021	1.668336e-14	2.890727e-10	1.111818e-11
27	7944478	7915333	NM_014747	RIMS3	0.659135	2.099659e-14	3.638079e-10	1.347437e-11
28	7944478	7897860	NM_001243	TNFRSF8	0.658590	2.243262e-14	3.886900e-10	1.388179e-11
29	7944478	8164766	NM_152572	C9orf98	0.658250	2.337700e-14	4.050534e-10	1.396736e-11
30	7944478	8018164	BC093631	KIF19	0.658162	2.362775e-14	4.093980e-10	1.364660e-11
31	7944478	8039520	NM_001101401	SBK2	0.656930	2.741933e-14	4.750948e-10	1.532564e-11
32	7944478	8110783	NM_198253	TERT	0.656824	2.776994e-14	4.811698e-10	1.503656e-11
33	7944478	8165498	NM_001001710	FAM166A	0.656588	2.857165e-14	4.950609e-10	1.500185e-11
34	7944478	7912250	EF592573	MIR34A	0.655975	3.075435e-14	5.328806e-10	1.567296e-11
35	7944478	7899528	NM_000911	OPRD1	0.655957	3.082064e-14	5.340292e-10	1.525798e-11
36	7944478	7915404	NM_033553	GUCA2A	0.655540	3.240127e-14	5.614168e-10	1.559491e-11
37	7944478	8119599	NM_138296	PTCRA	0.655479	3.264080e-14	5.655672e-10	1.528560e-11
38	7944478	8005951	NR_000013	SNORD42B	-0.654908	3.495083e-14	6.055931e-10	1.593666e-11
39	7944478	8129675			0.654000	3.895145e-14	6.749117e-10	1.730543e-11
40	7944478	8047641	NM_177538	CYP20A1	-0.653855	3.963028e-14	6.866739e-10	1.716685e-11
41	7944478	8163936	NM_014368	LHX6	0.653610	4.080272e-14	7.069887e-10	1.724363e-11
42	7944478	8143296	NM_198508	KLRG2	0.653358	4.204487e-14	7.285115e-10	1.734551e-11
43	7944478	8009951	NM_000213	ITGB4	0.653227	4.270528e-14	7.399544e-10	1.720824e-11
44	7944478	7995344			0.652852	4.464736e-14	7.736048e-10	1.758193e-11
45	7944478	8149146			0.652818	4.483093e-14	7.767855e-10	1.726190e-11
46	7944478	7997533	NM_013370	OSGIN1	0.652449	4.683184e-14	8.114553e-10	1.764033e-11
47	7944478	8157818	NM_001045476	WDR38	0.651863	5.019881e-14	8.697948e-10	1.850627e-11
48	7944478	7977978	NM_005864	EFS	0.651095	5.496300e-14	9.523440e-10	1.984050e-11
49	7944478	8131056	NM_017781	CYP2W1	0.650788	5.698490e-14	9.873773e-10	2.015056e-11
50	7944478	8103011	NM_199324	OTUD4	-0.650683	5.769270e-14	9.996414e-10	1.999283e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation