[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6941	7922330	NM_153747	PIGC		phosphatidylinositol glycan anchor biosynthesis, class C

Fetching correlation data, please wait...
Getting list of correlations for id 6941.
Getting list of p-values for id 6941.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.108 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7922330	8040456	NM_001105569	MSGN1	-0.608510	5.746194e-12	9.956430e-8	9.956430e-8
2	7922330	7970262	NM_001008895	CUL4A	0.575777	1.313122e-10	2.275246e-6	1.137623e-6
3	7922330	8108483	NM_031467	SLC4A9	-0.570351	2.134665e-10	3.698735e-6	1.232912e-6
4	7922330	7944216	NM_006476	ATP5L	0.569758	2.249849e-10	3.898314e-6	9.745785e-7
5	7922330	8073573	NM_001002034	FAM109B	-0.569584	2.284730e-10	3.958751e-6	7.917503e-7
6	7922330	8034747	ENST00000343945		-0.566210	3.074691e-10	5.327517e-6	8.879195e-7
7	7922330	8069852	NM_181602	KRTAP6-1	-0.565884	3.163465e-10	5.481337e-6	7.830481e-7
8	7922330	7955589	NM_002135	NR4A1	-0.563063	4.043570e-10	7.006293e-6	8.757867e-7
9	7922330	8019585	NM_030966	KRTAP1-3	-0.559326	5.577536e-10	9.664197e-6	1.073800e-6
10	7922330	8015189	NM_030966	KRTAP1-3	-0.559326	5.577536e-10	9.664197e-6	9.664197e-7
11	7922330	8136863	NM_153345	TMEM139	-0.557556	6.486501e-10	1.123916e-5	1.021742e-6
12	7922330	7990191	NM_052840	CELF6	-0.556680	6.986789e-10	1.210601e-5	1.008834e-6
13	7922330	8003193	BC093665	FAM92B	-0.555757	7.555038e-10	1.309061e-5	1.006970e-6
14	7922330	7942267	NM_001012710	KRTAP5-10	-0.553262	9.320280e-10	1.614925e-5	1.153518e-6
15	7922330	8075458	NM_134270	SMTN	-0.553029	9.503974e-10	1.646754e-5	1.097836e-6
16	7922330	8069083	AB209578	C21orf2	-0.552809	9.680830e-10	1.677397e-5	1.048373e-6
17	7922330	7955896	NM_016057	COPZ1	0.552618	9.837107e-10	1.704476e-5	1.002633e-6
18	7922330	8144685			-0.551108	1.115796e-9	1.933340e-5	1.074078e-6
19	7922330	8092473	NM_004366	CLCN2	-0.549946	1.228859e-9	2.129244e-5	1.120655e-6
20	7922330	8037688	NM_030785	RSPH6A	-0.548797	1.351457e-9	2.341670e-5	1.170835e-6
21	7922330	7983979	L17330		-0.547899	1.455410e-9	2.521789e-5	1.200852e-6
22	7922330	7905037			-0.547048	1.560824e-9	2.704441e-5	1.229291e-6
23	7922330	7933707	NM_032997	ZWINT	-0.546963	1.571801e-9	2.723460e-5	1.184113e-6
24	7922330	8071745	NM_182520	C22orf15	-0.545971	1.705033e-9	2.954311e-5	1.230963e-6
25	7922330	8083523	NM_003875	GMPS	0.544805	1.875411e-9	3.249525e-5	1.299810e-6
26	7922330	8108453	NM_032289	PSD2	-0.543617	2.065720e-9	3.579274e-5	1.376644e-6
27	7922330	8045336	NM_001508	GPR39	-0.543572	2.073221e-9	3.592270e-5	1.330470e-6
28	7922330	7934719	NM_003019	SFTPD	-0.543519	2.082234e-9	3.607888e-5	1.288531e-6
29	7922330	7897469	NM_001130924	TMEM201	-0.542517	2.258297e-9	3.912952e-5	1.349294e-6
30	7922330	8090639	NM_014602	PIK3R4	0.541859	2.381639e-9	4.126666e-5	1.375555e-6
31	7922330	7998427	NM_012467	TPSG1	-0.541375	2.476588e-9	4.291184e-5	1.384253e-6
32	7922330	8089299	NM_001777	CD47	0.540315	2.697106e-9	4.673276e-5	1.460399e-6
33	7922330	7941401	NM_004561	OVOL1	-0.540082	2.748130e-9	4.761685e-5	1.442935e-6
34	7922330	7984606	NM_014249	NR2E3	-0.538716	3.065858e-9	5.312212e-5	1.562415e-6
35	7922330	7902441	NM_030965	ST6GALNAC5	-0.536341	3.703996e-9	6.417914e-5	1.833690e-6
36	7922330	7912764	NM_198546	SPATA21	-0.536140	3.763444e-9	6.520919e-5	1.811366e-6
37	7922330	7913206	NM_019062	RNF186	-0.535992	3.807938e-9	6.598015e-5	1.783247e-6
38	7922330	8058614	NM_006055	LANCL1	0.533461	4.649359e-9	8.055945e-5	2.119985e-6
39	7922330	8071927	NM_005265	GGT1	-0.532790	4.900682e-9	8.491411e-5	2.177285e-6
40	7922330	8076561	AB051441	KIAA1654	-0.532383	5.059404e-9	8.766429e-5	2.191607e-6
41	7922330	8006762	NM_032351	MRPL45	0.528964	6.602773e-9	1.144062e-4	2.790396e-6
42	7922330	7926084	NM_001001973	ATP5C1	0.527692	7.284360e-9	1.262161e-4	3.005145e-6
43	7922330	8045030	NM_001080527	MYO7B	-0.527344	7.482333e-9	1.296464e-4	3.015032e-6
44	7922330	7959921	AK098523	LOC338797	-0.527119	7.613111e-9	1.319124e-4	2.998009e-6
45	7922330	8130785	NM_005299	GPR31	-0.526674	7.878520e-9	1.365111e-4	3.033580e-6
46	7922330	7921936	NM_177398	LMX1A	-0.526332	8.087829e-9	1.401378e-4	3.046474e-6
47	7922330	7949444	NM_005714	KCNK7	-0.525826	8.407886e-9	1.456834e-4	3.099648e-6
48	7922330	8032051	NM_182577	ODF3L2	-0.525303	8.751420e-9	1.516358e-4	3.159080e-6
49	7922330	7905519	NM_178353	LCE1E	-0.525157	8.849690e-9	1.533386e-4	3.129359e-6
50	7922330	8018522	NM_001080542	FBF1	-0.525061	8.915431e-9	1.544777e-4	3.089553e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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