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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
3565 8075458 NM_134270 SMTN link to infopage smoothelin
5244 8072413 NM_134269 SMTN link to infopage smoothelin

Fetching correlation data, please wait...
Getting list of correlations for id 3565.
Getting list of p-values for id 3565.
1 of 2 done.
Getting list of correlations for id 5244.
Getting list of p-values for id 5244.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.192 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8072413 8034151 NM_020812 DOCK6 link to infopage 0.729180 1.147913e-18 3.977976e-14 3.977976e-14
2 8072413 8000192 ENST00000198767 link to infopage -0.726201 1.852322e-18 6.419037e-14 3.209519e-14
3 8072413 8096556 NM_015143 METAP1 link to infopage -0.720875 4.291529e-18 1.487186e-13 4.957288e-14
4 8072413 7977203 NM_001080464 ASPG link to infopage 0.720087 4.851077e-18 1.681092e-13 4.202731e-14
5 8075458 8042513 ENST00000459231 link to infopage 0.715798 9.389541e-18 3.253852e-13 6.507703e-14
6 8075458 8010768 link to infopage 0.714722 1.105995e-17 3.832714e-13 6.387857e-14
7 8072413 8018379 NM_020753 CASKIN2 link to infopage 0.714504 1.143099e-17 3.961294e-13 5.658991e-14
8 8072413 8060134 NM_004321 KIF1A link to infopage 0.713387 1.353642e-17 4.690909e-13 5.863637e-14
9 8072413 8110821 NM_001044 SLC6A3 link to infopage 0.712267 1.602409e-17 5.552989e-13 6.169988e-14
10 8075458 8019578 NM_030967 KRTAP1-1 link to infopage 0.707724 3.150795e-17 1.091876e-12 1.091876e-13
11 8075458 8015196 NM_030967 KRTAP1-1 link to infopage 0.707724 3.150795e-17 1.091876e-12 9.926149e-14
12 8072413 8115691 NM_003062 SLIT3 link to infopage 0.698511 1.194159e-16 4.138239e-12 3.448533e-13
13 8072413 8179716 NM_001264 CDSN link to infopage 0.698489 1.197845e-16 4.151011e-12 3.193085e-13
14 8072413 8040469 AY189285 LOC100131373 link to infopage 0.698407 1.211816e-16 4.199428e-12 2.999591e-13
15 8072413 8124862 NM_001264 CDSN link to infopage 0.697119 1.453954e-16 5.038534e-12 3.359022e-13
16 8072413 7937560 NM_002457 MUC2 link to infopage 0.696953 1.488408e-16 5.157929e-12 3.223705e-13
17 8072413 8049729 NM_198998 AQP12A link to infopage 0.696215 1.651418e-16 5.722824e-12 3.366367e-13
18 8072413 8051622 NM_001031684 SRSF7 link to infopage -0.693748 2.331797e-16 8.080610e-12 4.489228e-13
19 8072413 7962625 NM_001098531 RAPGEF3 link to infopage 0.693265 2.493668e-16 8.641558e-12 4.548189e-13
20 8072413 7955361 NM_052879 LARP4 link to infopage -0.692984 2.592967e-16 8.985667e-12 4.492834e-13
21 8072413 8086391 NM_000729 CCK link to infopage 0.692522 2.764515e-16 9.580152e-12 4.561977e-13
22 8072413 8033462 NM_206833 CTXN1 link to infopage 0.691760 3.071434e-16 1.064375e-11 4.838067e-13
23 8072413 8135576 NM_015641 TES link to infopage -0.691711 3.092135e-16 1.071549e-11 4.658907e-13
24 8072413 8026063 NM_014975 MAST1 link to infopage 0.691667 3.111307e-16 1.078192e-11 4.492468e-13
25 8072413 8005328 NM_016239 MYO15A link to infopage 0.691543 3.164663e-16 1.096682e-11 4.386730e-13
26 8072413 7913450 NM_005529 HSPG2 link to infopage 0.691510 3.179212e-16 1.101724e-11 4.237401e-13
27 8072413 7916928 NM_030816 ANKRD13C link to infopage -0.691365 3.243240e-16 1.123913e-11 4.162639e-13
28 8072413 7978093 NM_032452 JPH4 link to infopage 0.691300 3.272689e-16 1.134118e-11 4.050420e-13
29 8072413 8150928 NM_003580 NSMAF link to infopage -0.690941 3.438459e-16 1.191564e-11 4.108840e-13
30 8072413 8066451 NM_182970 RIMS4 link to infopage 0.690354 3.727165e-16 1.291612e-11 4.305372e-13
31 8072413 7917156 NM_003902 FUBP1 link to infopage -0.690075 3.872414e-16 1.341946e-11 4.328859e-13
32 8072413 7930956 NM_007190 SEC23IP link to infopage -0.689136 4.403430e-16 1.525965e-11 4.768639e-13
33 8072413 7914667 NM_052896 CSMD2 link to infopage 0.688913 4.539716e-16 1.573193e-11 4.767252e-13
34 8072413 7952290 NM_012101 TRIM29 link to infopage 0.688903 4.545629e-16 1.575242e-11 4.633065e-13
35 8072413 8137596 NM_014671 UBE3C link to infopage -0.687826 5.263549e-16 1.824030e-11 5.211515e-13
36 8072413 7936762 NM_001001976 ATE1 link to infopage -0.687651 5.390747e-16 1.868109e-11 5.189193e-13
37 8072413 7963880 NM_001144996 ITGA7 link to infopage 0.687511 5.493826e-16 1.903830e-11 5.145488e-13
38 8072413 8131205 NM_152744 SDK1 link to infopage 0.687149 5.770297e-16 1.999639e-11 5.262207e-13
39 8075458 8013042 NM_000422 KRT17 link to infopage 0.687014 5.876763e-16 2.036534e-11 5.221881e-13
40 8072413 8136401 NM_015135 NUP205 link to infopage -0.686595 6.219113e-16 2.155171e-11 5.387929e-13
41 8072413 8092473 NM_004366 CLCN2 link to infopage 0.686562 6.247348e-16 2.164956e-11 5.280380e-13
42 8072413 7913300 NM_016287 HP1BP3 link to infopage -0.686293 6.478818e-16 2.245170e-11 5.345642e-13
43 8072413 7989128 NM_144571 CNOT6L link to infopage -0.686267 6.501080e-16 2.252884e-11 5.239266e-13
44 8072413 7936614 NM_003750 EIF3A link to infopage -0.685867 6.861598e-16 2.377818e-11 5.404132e-13
45 8072413 8060126 NM_198998 AQP12A link to infopage 0.685084 7.624724e-16 2.642272e-11 5.871716e-13
46 8072413 8032037 NM_012435 SHC2 link to infopage 0.685079 7.629619e-16 2.643968e-11 5.747757e-13
47 8072413 7971820 NM_016075 VPS36 link to infopage -0.684370 8.390720e-16 2.907720e-11 6.186638e-13
48 8072413 8085571 NM_152396 METTL6 link to infopage -0.684185 8.602054e-16 2.980956e-11 6.210324e-13
49 8075458 8037688 NM_030785 RSPH6A link to infopage 0.684019 8.795274e-16 3.047914e-11 6.220233e-13
50 8072413 7936683 NM_001033925 TIAL1 link to infopage -0.683755 9.111402e-16 3.157465e-11 6.314930e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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