[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 4 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
1111	8074714	NR_024591	POM121L1P		POM121 membrane glycoprotein-like 1, pseudogene
4603	8074867	NR_024591	POM121L1P		POM121 membrane glycoprotein-like 1, pseudogene
7812	8071530	NR_024591	POM121L1P		POM121 membrane glycoprotein-like 1, pseudogene
7813	8074712	NR_024591	POM121L1P		POM121 membrane glycoprotein-like 1, pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 1111.
Getting list of p-values for id 1111.
1 of 4 done.
Getting list of correlations for id 4603.
Getting list of p-values for id 4603.
2 of 4 done.
Getting list of correlations for id 7812.
Getting list of p-values for id 7812.
3 of 4 done.
Getting list of correlations for id 7813.
Getting list of p-values for id 7813.
4 of 4 done.
Calculating corrections for multiple testing (n=69308), please wait...
Done; whole program took 0.447 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8074712	8071530	NR_024591	POM121L1P	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8071530	8074712	NR_024591	POM121L1P	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8074867	8075024	NR_024593	POM121L10P	0.944133	1.848929e-51	1.281456e-46	4.271520e-47
4	8074714	8075024	NR_024593	POM121L10P	0.907407	1.436426e-40	9.955583e-36	2.488896e-36
5	8074714	8074867	NR_024591	POM121L1P	0.853474	6.420856e-31	4.450167e-26	8.900334e-27
6	8074867	8074714	NR_024591	POM121L1P	0.853474	6.420856e-31	4.450167e-26	7.416945e-27
7	8074867	8071168	NR_024593	POM121L10P	0.836056	1.310551e-28	9.083170e-24	1.297596e-24
8	8074714	8071168	NR_024593	POM121L10P	0.773547	3.981163e-22	2.759264e-17	3.449081e-18
9	8071530	8158666	AK128680	HMCN2	0.706527	3.757391e-17	2.604173e-12	2.893525e-13
10	8074712	8158666	AK128680	HMCN2	0.706527	3.757391e-17	2.604173e-12	2.604173e-13
11	8074712	8137336	NM_004769	ACCN3	0.702481	6.767985e-17	4.690755e-12	4.264323e-13
12	8071530	8137336	NM_004769	ACCN3	0.702481	6.767985e-17	4.690755e-12	3.908963e-13
13	8074714	7960512			0.688310	4.928478e-16	3.415830e-11	2.627561e-12
14	8074712	8151613	AF495523	REXO1L1	0.686302	6.470738e-16	4.484739e-11	3.203385e-12
15	8071530	8151613	AF495523	REXO1L1	0.686302	6.470738e-16	4.484739e-11	2.989826e-12
16	8074712	8151617	AF495523	REXO1L1	0.686302	6.470738e-16	4.484739e-11	2.802962e-12
17	8071530	8151617	AF495523	REXO1L1	0.686302	6.470738e-16	4.484739e-11	2.638082e-12
18	8071530	8151621	AF495523	REXO1L1	0.686302	6.470738e-16	4.484739e-11	2.491522e-12
19	8074712	8151605	AF495523	REXO1L1	0.686302	6.470738e-16	4.484739e-11	2.360389e-12
20	8071530	8151625	AF495523	REXO1L1	0.686302	6.470738e-16	4.484739e-11	2.242370e-12
21	8074712	8151621	AF495523	REXO1L1	0.686302	6.470738e-16	4.484739e-11	2.135590e-12
22	8074712	8151625	AF495523	REXO1L1	0.686302	6.470738e-16	4.484739e-11	2.038518e-12
23	8071530	8151605	AF495523	REXO1L1	0.686302	6.470738e-16	4.484739e-11	1.949887e-12
24	8074712	7913450	NM_005529	HSPG2	0.679896	1.520026e-15	1.053499e-10	4.389581e-12
25	8071530	7913450	NM_005529	HSPG2	0.679896	1.520026e-15	1.053499e-10	4.213997e-12
26	8071530	7949021	NM_173587	RCOR2	0.674307	3.147309e-15	2.181337e-10	8.389759e-12
27	8074712	7949021	NM_173587	RCOR2	0.674307	3.147309e-15	2.181337e-10	8.079027e-12
28	8074867	8086985	NM_000094	COL7A1	0.672359	4.040894e-15	2.800663e-10	1.000237e-11
29	8074867	8064059	NM_020882	COL20A1	0.671572	4.467758e-15	3.096514e-10	1.067763e-11
30	8071530	8138474	NM_198956	SP8	0.671441	4.542726e-15	3.148473e-10	1.049491e-11
31	8074712	8138474	NM_198956	SP8	0.671441	4.542726e-15	3.148473e-10	1.015636e-11
32	8074712	8089729	NM_001015887	IGSF11	0.669528	5.791361e-15	4.013877e-10	1.254336e-11
33	8071530	8089729	NM_001015887	IGSF11	0.669528	5.791361e-15	4.013877e-10	1.216326e-11
34	8074867	8076815	AY358194	LOC100128818	0.669508	5.805603e-15	4.023747e-10	1.183455e-11
35	8074712	8016640	NR_024193	HILS1	0.669385	5.896511e-15	4.086754e-10	1.167644e-11
36	8071530	8016640	NR_024193	HILS1	0.669385	5.896511e-15	4.086754e-10	1.135209e-11
37	8071530	7911902	NM_015102	NPHP4	0.667825	7.177280e-15	4.974429e-10	1.344440e-11
38	8074712	7911902	NM_015102	NPHP4	0.667825	7.177280e-15	4.974429e-10	1.309060e-11
39	8074712	8153346	NM_023946	LYNX1	0.664829	1.043431e-14	7.231810e-10	1.854310e-11
40	8071530	8153346	NM_023946	LYNX1	0.664829	1.043431e-14	7.231810e-10	1.807953e-11
41	8071530	8048551	NM_005876	SPEG	0.663351	1.252872e-14	8.683403e-10	2.117903e-11
42	8074712	8048551	NM_005876	SPEG	0.663351	1.252872e-14	8.683403e-10	2.067477e-11
43	8074867	7914361	NM_001856	COL16A1	0.662576	1.378523e-14	9.554265e-10	2.221922e-11
44	8074867	8174389	NM_033641	COL4A6	0.662432	1.403196e-14	9.725270e-10	2.210289e-11
45	8074712	8099008	NM_020972	ZFYVE28	0.662203	1.443179e-14	1.000239e-9	2.222753e-11
46	8071530	8099008	NM_020972	ZFYVE28	0.662203	1.443179e-14	1.000239e-9	2.174432e-11
47	8071530	8165416	NM_203468	ENTPD2	0.662173	1.448557e-14	1.003966e-9	2.136097e-11
48	8074712	8165416	NM_203468	ENTPD2	0.662173	1.448557e-14	1.003966e-9	2.091595e-11
49	8074867	8063970	NM_001853	COL9A3	0.661198	1.632575e-14	1.131505e-9	2.309194e-11
50	8071530	7903632	NM_001408	CELSR2	0.659955	1.900308e-14	1.317065e-9	2.634130e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation