[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 7813.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7813	8074712	NR_024591	POM121L1P		POM121 membrane glycoprotein-like 1, pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 7813.
Getting list of p-values for id 7813.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.100 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8074712	8071530	NR_024591	POM121L1P	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8074712	8158666	AK128680	HMCN2	0.706527	3.757391e-17	6.510432e-13	3.255216e-13
3	8074712	8137336	NM_004769	ACCN3	0.702481	6.767985e-17	1.172689e-12	3.908963e-13
4	8074712	8151605	AF495523	REXO1L1	0.686302	6.470738e-16	1.121185e-11	2.802962e-12
5	8074712	8151617	AF495523	REXO1L1	0.686302	6.470738e-16	1.121185e-11	2.242370e-12
6	8074712	8151621	AF495523	REXO1L1	0.686302	6.470738e-16	1.121185e-11	1.868641e-12
7	8074712	8151625	AF495523	REXO1L1	0.686302	6.470738e-16	1.121185e-11	1.601693e-12
8	8074712	8151613	AF495523	REXO1L1	0.686302	6.470738e-16	1.121185e-11	1.401481e-12
9	8074712	7913450	NM_005529	HSPG2	0.679896	1.520026e-15	2.633748e-11	2.926387e-12
10	8074712	7949021	NM_173587	RCOR2	0.674307	3.147309e-15	5.453343e-11	5.453343e-12
11	8074712	8138474	NM_198956	SP8	0.671441	4.542726e-15	7.871181e-11	7.155619e-12
12	8074712	8089729	NM_001015887	IGSF11	0.669528	5.791361e-15	1.003469e-10	8.362243e-12
13	8074712	8016640	NR_024193	HILS1	0.669385	5.896511e-15	1.021688e-10	7.859142e-12
14	8074712	7911902	NM_015102	NPHP4	0.667825	7.177280e-15	1.243607e-10	8.882909e-12
15	8074712	8153346	NM_023946	LYNX1	0.664829	1.043431e-14	1.807953e-10	1.205302e-11
16	8074712	8048551	NM_005876	SPEG	0.663351	1.252872e-14	2.170851e-10	1.356782e-11
17	8074712	8099008	NM_020972	ZFYVE28	0.662203	1.443179e-14	2.500597e-10	1.470939e-11
18	8074712	8165416	NM_203468	ENTPD2	0.662173	1.448557e-14	2.509914e-10	1.394397e-11
19	8074712	7903632	NM_001408	CELSR2	0.659955	1.900308e-14	3.292663e-10	1.732980e-11
20	8074712	7914667	NM_052896	CSMD2	0.658629	2.232853e-14	3.868865e-10	1.934432e-11
21	8074712	8115849			0.656758	2.799065e-14	4.849940e-10	2.309495e-11
22	8074712	7955184	NM_006262	PRPH	0.656544	2.872064e-14	4.976426e-10	2.262012e-11
23	8074712	8062108	NM_006404	PROCR	0.655577	3.225815e-14	5.589370e-10	2.430161e-11
24	8074712	7920744	NM_000298	PKLR	0.655459	3.271981e-14	5.669361e-10	2.362234e-11
25	8074712	7949857	NM_181843	NUDT8	0.654384	3.720816e-14	6.447058e-10	2.578823e-11
26	8074712	8157698	NM_080859	OR1K1	0.653966	3.910803e-14	6.776249e-10	2.606250e-11
27	8074712	7939620	NM_152312	GYLTL1B	0.653762	4.006901e-14	6.942757e-10	2.571391e-11
28	8074712	7918313	NM_001010985	MYBPHL	0.653382	4.192413e-14	7.264193e-10	2.594355e-11
29	8074712	8031076	NM_031896	CACNG7	0.651669	5.135946e-14	8.899054e-10	3.068639e-11
30	8074712	7942717	NM_000260	MYO7A	0.649463	6.658407e-14	1.153702e-9	3.845674e-11
31	8074712	8172197	NR_002191	PPP1R2P9	0.649433	6.681685e-14	1.157736e-9	3.734631e-11
32	8074712	8006940	NM_001030002	GRB7	0.649160	6.898298e-14	1.195268e-9	3.735213e-11
33	8074712	8064894	NM_152611	LRRN4	0.646182	9.756357e-14	1.690484e-9	5.122679e-11
34	8074712	8071758	NM_005940	MMP11	0.645613	1.041994e-13	1.805463e-9	5.310185e-11
35	8074712	7940002	NM_001005210	LRRC55	0.645087	1.107152e-13	1.918363e-9	5.481037e-11
36	8074712	8140144	NM_152559	WBSCR27	0.643992	1.255870e-13	2.176046e-9	6.044573e-11
37	8074712	8007363	NM_032387	WNK4	0.643601	1.313484e-13	2.275874e-9	6.151010e-11
38	8074712	8132667	NM_021116	ADCY1	0.642210	1.540034e-13	2.668418e-9	7.022151e-11
39	8074712	7899075	NM_004455	EXTL1	0.640067	1.964619e-13	3.404095e-9	8.728448e-11
40	8074712	8031157	NM_020659	TTYH1	0.639981	1.983825e-13	3.437373e-9	8.593433e-11
41	8074712	7976322	NM_001275	CHGA	0.639314	2.138915e-13	3.706098e-9	9.039263e-11
42	8074712	8030448	NM_001136052	CPT1C	0.638002	2.479599e-13	4.296402e-9	1.022953e-10
43	8074712	8010583	NR_027255	LOC388428	0.637785	2.540771e-13	4.402393e-9	1.023812e-10
44	8074712	8148517	NM_001702	BAI1	0.637511	2.620020e-13	4.539708e-9	1.031752e-10
45	8074712	7936762	NM_001001976	ATE1	-0.635896	3.138610e-13	5.438269e-9	1.208504e-10
46	8074712	7970241	NM_000504	F10	0.635851	3.154051e-13	5.465024e-9	1.188049e-10
47	8074712	7984802	NM_001130136	ISLR2	0.635376	3.325725e-13	5.762483e-9	1.226060e-10
48	8074712	8070896	AF427488	C21orf93	0.634942	3.489800e-13	6.046776e-9	1.259745e-10
49	8074712	7951987	NM_001077263	TMPRSS13	0.634581	3.632714e-13	6.294403e-9	1.284572e-10
50	8074712	8115691	NM_003062	SLIT3	0.633375	4.151283e-13	7.192928e-9	1.438586e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation