[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1023	8037283	NM_002780	PSG4		pregnancy specific beta-1-glycoprotein 4

Fetching correlation data, please wait...
Getting list of correlations for id 1023.
Getting list of p-values for id 1023.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8037283	7989849	NM_001144823	DENND4A	-0.574277	1.503215e-10	2.604621e-6	2.604621e-6
2	8037283	7916489	ENST00000362961		0.572233	1.805445e-10	3.128295e-6	1.564147e-6
3	8037283	8151066	NM_018120	ARMC1	-0.550546	1.169126e-9	2.025744e-5	6.752481e-6
4	8037283	8045697	NM_018151	RIF1	-0.546212	1.671619e-9	2.896415e-5	7.241037e-6
5	8037283	7949444	NM_005714	KCNK7	0.543726	2.047451e-9	3.547618e-5	7.095236e-6
6	8037283	8024557	NM_002067	GNA11	0.542981	2.175122e-9	3.768834e-5	6.281389e-6
7	8037283	8030908	NM_144684	ZNF480	-0.540380	2.683142e-9	4.649080e-5	6.641543e-6
8	8037283	8083282	NM_032383	HPS3	-0.538932	3.013351e-9	5.221233e-5	6.526542e-6
9	8037283	7972438	NM_178861	RNF113B	0.538601	3.094137e-9	5.361211e-5	5.956901e-6
10	8037283	7916570	NM_145243	OMA1	-0.537918	3.267557e-9	5.661696e-5	5.661696e-6
11	8037283	8108403	NM_199189	MATR3	-0.537555	3.363371e-9	5.827713e-5	5.297921e-6
12	8037283	8155234	NM_032226	ZCCHC7	-0.536567	3.638140e-9	6.303805e-5	5.253171e-6
13	8037283	8044417	NM_032824	TMEM87B	-0.534129	4.411429e-9	7.643683e-5	5.879756e-6
14	8037283	7897154	NM_014448	ARHGEF16	0.533692	4.565690e-9	7.910970e-5	5.650693e-6
15	8037283	7996430	NM_001040667	HSF4	0.533081	4.790045e-9	8.299712e-5	5.533141e-6
16	8037283	7950796	NM_001039618	CREBZF	-0.532253	5.111071e-9	8.855953e-5	5.534971e-6
17	8037283	8129045	NM_001527	HDAC2	-0.531038	5.619857e-9	9.737527e-5	5.727957e-6
18	8037283	8005512	NM_002767	PRPSAP2	-0.530339	5.934542e-9	1.028278e-4	5.712656e-6
19	8037283	7999562	NM_002582	PARN	-0.529620	6.275241e-9	1.087311e-4	5.722690e-6
20	8037283	8132503	NM_004760	STK17A	-0.527675	7.294034e-9	1.263837e-4	6.319186e-6
21	8037283	8100834	NM_002092	GRSF1	-0.526526	7.968146e-9	1.380641e-4	6.574479e-6
22	8037283	8078187	NM_015184	PLCL2	-0.525336	8.729695e-9	1.512594e-4	6.875429e-6
23	8037283	7917120	NM_015017	USP33	-0.524826	9.076678e-9	1.572716e-4	6.837896e-6
24	8037283	8089128	NM_014820	TOMM70A	-0.523496	1.004522e-8	1.740536e-4	7.252232e-6
25	8037283	8024467	NM_182973	TMPRSS9	0.522721	1.065461e-8	1.846124e-4	7.384494e-6
26	8037283	7980891	NM_001128596	TC2N	-0.521032	1.210731e-8	2.097834e-4	8.068593e-6
27	8037283	7980940	NM_004993	ATXN3	-0.521005	1.213176e-8	2.102071e-4	7.785447e-6
28	8037283	8049610	NM_198582	KLHL30	0.520703	1.241088e-8	2.150433e-4	7.680117e-6
29	8037283	8171216	NM_016379	VCX3A	0.520317	1.277758e-8	2.213972e-4	7.634385e-6
30	8037283	8107474	NM_005509	DMXL1	-0.519684	1.340085e-8	2.321964e-4	7.739881e-6
31	8037283	8090091	NM_198402	PTPLB	-0.519501	1.358618e-8	2.354078e-4	7.593799e-6
32	8037283	7899101	NM_006314	CNKSR1	0.519223	1.387217e-8	2.403631e-4	7.511346e-6
33	8037283	8169701	NM_014060	MCTS1	-0.518772	1.434936e-8	2.486313e-4	7.534282e-6
34	8037283	8058161	NM_006190	ORC2L	-0.518553	1.458711e-8	2.527509e-4	7.433849e-6
35	8037283	8152323	NM_001568	EIF3E	-0.518467	1.468034e-8	2.543663e-4	7.267610e-6
36	8037283	7978718	NM_006364	SEC23A	-0.516829	1.658960e-8	2.874481e-4	7.984669e-6
37	8037283	8056837	NM_001033045	GPR155	-0.516818	1.660395e-8	2.876966e-4	7.775585e-6
38	8037283	8162998	ENST00000452046		0.516253	1.731642e-8	3.000416e-4	7.895833e-6
39	8037283	7930380	NM_016824	ADD3	-0.516117	1.749198e-8	3.030835e-4	7.771372e-6
40	8037283	8150818	NM_006756	TCEA1	-0.515405	1.844100e-8	3.195271e-4	7.988178e-6
41	8037283	8121277	NM_001624	AIM1	-0.515110	1.884905e-8	3.265976e-4	7.965794e-6
42	8037283	8010719	NM_144999	LRRC45	0.514953	1.906857e-8	3.304012e-4	7.866695e-6
43	8037283	7939137	NM_006360	EIF3M	-0.514841	1.922740e-8	3.331532e-4	7.747750e-6
44	8037283	8078600	NM_006756	TCEA1	-0.514131	2.026328e-8	3.511019e-4	7.979589e-6
45	8037283	8094876	NM_021927	GUF1	-0.513048	2.194576e-8	3.802541e-4	8.450092e-6
46	8037283	8111796	NM_206907	PRKAA1	-0.512989	2.204218e-8	3.819248e-4	8.302713e-6
47	8037283	8094848	NM_006345	SLC30A9	-0.512040	2.363116e-8	4.094571e-4	8.711853e-6
48	8037283	8152553	NM_003184	TAF2	-0.511314	2.492144e-8	4.318137e-4	8.996119e-6
49	8037283	7953878	NM_001004419	CLEC2D	-0.511223	2.508782e-8	4.346967e-4	8.871361e-6
50	8037283	8117172	NM_138574	HDGFL1	0.510631	2.619647e-8	4.539062e-4	9.078124e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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