[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
1246	8169676	NM_032498	RHOXF2		Rhox homeobox family, member 2
1247	8174750	NM_032498	RHOXF2		Rhox homeobox family, member 2

Fetching correlation data, please wait...
Getting list of correlations for id 1246.
Getting list of p-values for id 1246.
1 of 2 done.
Getting list of correlations for id 1247.
Getting list of p-values for id 1247.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.194 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8169676	8174750	NM_032498	RHOXF2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8174750	8169676	NM_032498	RHOXF2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8174750	7913290	NM_001103161	SH2D5	0.735084	4.362907e-19	1.511922e-14	5.039740e-15
4	8169676	7913290	NM_001103161	SH2D5	0.735084	4.362907e-19	1.511922e-14	3.779805e-15
5	8174750	8004842	NM_173728	ARHGEF15	0.714034	1.227505e-17	4.253797e-13	8.507593e-14
6	8169676	8004842	NM_173728	ARHGEF15	0.714034	1.227505e-17	4.253797e-13	7.089661e-14
7	8174750	8043114	NM_031283	TCF7L1	0.697738	1.332300e-16	4.616953e-12	6.595647e-13
8	8169676	8043114	NM_031283	TCF7L1	0.697738	1.332300e-16	4.616953e-12	5.771191e-13
9	8174750	7962625	NM_001098531	RAPGEF3	0.696274	1.637895e-16	5.675962e-12	6.306625e-13
10	8169676	7962625	NM_001098531	RAPGEF3	0.696274	1.637895e-16	5.675962e-12	5.675962e-13
11	8174750	7936762	NM_001001976	ATE1	-0.696251	1.643063e-16	5.693871e-12	5.176246e-13
12	8169676	7936762	NM_001001976	ATE1	-0.696251	1.643063e-16	5.693871e-12	4.744893e-13
13	8174750	8088602	NM_015520	MAGI1	0.689855	3.991096e-16	1.383074e-11	1.063903e-12
14	8169676	8088602	NM_015520	MAGI1	0.689855	3.991096e-16	1.383074e-11	9.879102e-13
15	8174750	7992845	NM_003456	ZNF205	0.684981	7.730157e-16	2.678808e-11	1.785872e-12
16	8169676	7992845	NM_003456	ZNF205	0.684981	7.730157e-16	2.678808e-11	1.674255e-12
17	8174750	7975747	NM_001933	DLST	-0.682923	1.018104e-15	3.528138e-11	2.075375e-12
18	8169676	7975747	NM_001933	DLST	-0.682923	1.018104e-15	3.528138e-11	1.960076e-12
19	8174750	8110237	NM_133369	UNC5A	0.682507	1.076034e-15	3.728887e-11	1.962572e-12
20	8169676	8110237	NM_133369	UNC5A	0.682507	1.076034e-15	3.728887e-11	1.864444e-12
21	8169676	7905025	NM_000798	DRD5	0.680829	1.344146e-15	4.658004e-11	2.218097e-12
22	8174750	7905025	NM_000798	DRD5	0.680829	1.344146e-15	4.658004e-11	2.117274e-12
23	8174750	8098244	ENST00000410789		0.680735	1.360833e-15	4.715832e-11	2.050362e-12
24	8169676	8098244	ENST00000410789		0.680735	1.360833e-15	4.715832e-11	1.964930e-12
25	8169676	8130837	NM_024919	FRMD1	0.680702	1.366835e-15	4.736630e-11	1.894652e-12
26	8174750	8130837	NM_024919	FRMD1	0.680702	1.366835e-15	4.736630e-11	1.821781e-12
27	8169676	8019585	NM_030966	KRTAP1-3	0.680576	1.389841e-15	4.816356e-11	1.783835e-12
28	8169676	8015189	NM_030966	KRTAP1-3	0.680576	1.389841e-15	4.816356e-11	1.720127e-12
29	8174750	8019585	NM_030966	KRTAP1-3	0.680576	1.389841e-15	4.816356e-11	1.660812e-12
30	8174750	8015189	NM_030966	KRTAP1-3	0.680576	1.389841e-15	4.816356e-11	1.605452e-12
31	8169676	7955184	NM_006262	PRPH	0.676355	2.415021e-15	8.369015e-11	2.699682e-12
32	8174750	7955184	NM_006262	PRPH	0.676355	2.415021e-15	8.369015e-11	2.615317e-12
33	8169676	8151617	AF495523	REXO1L1	0.675698	2.629674e-15	9.112874e-11	2.761477e-12
34	8169676	8151625	AF495523	REXO1L1	0.675698	2.629674e-15	9.112874e-11	2.680257e-12
35	8174750	8151625	AF495523	REXO1L1	0.675698	2.629674e-15	9.112874e-11	2.603678e-12
36	8174750	8151613	AF495523	REXO1L1	0.675698	2.629674e-15	9.112874e-11	2.531354e-12
37	8169676	8151621	AF495523	REXO1L1	0.675698	2.629674e-15	9.112874e-11	2.462939e-12
38	8174750	8151617	AF495523	REXO1L1	0.675698	2.629674e-15	9.112874e-11	2.398125e-12
39	8174750	8151621	AF495523	REXO1L1	0.675698	2.629674e-15	9.112874e-11	2.336634e-12
40	8174750	8151605	AF495523	REXO1L1	0.675698	2.629674e-15	9.112874e-11	2.278218e-12
41	8169676	8151613	AF495523	REXO1L1	0.675698	2.629674e-15	9.112874e-11	2.222652e-12
42	8169676	8151605	AF495523	REXO1L1	0.675698	2.629674e-15	9.112874e-11	2.169732e-12
43	8174750	8177178			0.673687	3.408326e-15	1.181121e-10	2.746793e-12
44	8174750	8176677			0.673687	3.408326e-15	1.181121e-10	2.684366e-12
45	8169676	8177178			0.673687	3.408326e-15	1.181121e-10	2.624714e-12
46	8169676	8176677			0.673687	3.408326e-15	1.181121e-10	2.567655e-12
47	8169676	8110821	NM_001044	SLC6A3	0.672381	4.029414e-15	1.396353e-10	2.970964e-12
48	8174750	8110821	NM_001044	SLC6A3	0.672381	4.029414e-15	1.396353e-10	2.909069e-12
49	8169676	8096556	NM_015143	METAP1	-0.669646	5.704979e-15	1.977004e-10	4.034701e-12
50	8174750	8096556	NM_015143	METAP1	-0.669646	5.704979e-15	1.977004e-10	3.954007e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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