[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6314	8049582	NM_016510	SCLY		selenocysteine lyase

Fetching correlation data, please wait...
Getting list of correlations for id 6314.
Getting list of p-values for id 6314.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8049582	8094156	NM_000798	DRD5	0.567974	2.633645e-10	4.563316e-6	4.563316e-6
2	8049582	8042513	ENST00000459231		0.567856	2.661115e-10	4.610914e-6	2.305457e-6
3	8049582	8075458	NM_134270	SMTN	0.544019	1.999244e-9	3.464089e-5	1.154696e-5
4	8049582	7950864	NM_001014811	ME3	0.541433	2.464959e-9	4.271035e-5	1.067759e-5
5	8049582	8026422			0.531983	5.220247e-9	9.045122e-5	1.809024e-5
6	8049582	7901314	ENST00000429520		0.527904	7.166054e-9	1.241662e-4	2.069437e-5
7	8049582	8175815	NM_001039582	PNCK	0.526932	7.723737e-9	1.338292e-4	1.911846e-5
8	8049582	7991779	NM_032039	ITFG3	0.526511	7.977437e-9	1.382250e-4	1.727813e-5
9	8049582	7989887	NM_032445	MEGF11	0.521755	1.146314e-8	1.986218e-4	2.206909e-5
10	8049582	7941059	ENST00000316124		0.519266	1.382744e-8	2.395881e-4	2.395881e-5
11	8049582	8079532	NM_015466	PTPN23	0.519210	1.388628e-8	2.406075e-4	2.187341e-5
12	8049582	8015189	NM_030966	KRTAP1-3	0.516904	1.649737e-8	2.858499e-4	2.382083e-5
13	8049582	8019585	NM_030966	KRTAP1-3	0.516904	1.649737e-8	2.858499e-4	2.198846e-5
14	8049582	8093576	NR_003004	SCARNA22	0.516250	1.732014e-8	3.001060e-4	2.143614e-5
15	8049582	8080128	NM_000839	GRM2	0.515941	1.772277e-8	3.070825e-4	2.047217e-5
16	8049582	8117081	NM_153042	KDM1B	-0.515779	1.793716e-8	3.107972e-4	1.942482e-5
17	8049582	8154132	NR_026663	C9orf70	0.515705	1.803498e-8	3.124921e-4	1.838189e-5
18	8049582	7998629	ENST00000431136		0.513589	2.108909e-8	3.654106e-4	2.030059e-5
19	8049582	8058997	NM_017431	PRKAG3	0.513440	2.132271e-8	3.694586e-4	1.944519e-5
20	8049582	7905519	NM_178353	LCE1E	0.511810	2.403420e-8	4.164405e-4	2.082203e-5
21	8049582	7951910	NM_012104	BACE1	0.511175	2.517720e-8	4.362453e-4	2.077359e-5
22	8049582	7960397	NM_020638	FGF23	0.509697	2.804156e-8	4.858761e-4	2.208528e-5
23	8049582	7912316	NM_001079843	CASZ1	0.509352	2.875532e-8	4.982435e-4	2.166276e-5
24	8049582	7936516	NM_025015	HSPA12A	0.508813	2.990229e-8	5.181170e-4	2.158821e-5
25	8049582	8034747	ENST00000343945		0.506449	3.547515e-8	6.146779e-4	2.458712e-5
26	8049582	8019937	GENSCAN00000003808		0.506441	3.549434e-8	6.150104e-4	2.365425e-5
27	8049582	7997880	NM_004933	CDH15	0.504775	4.000692e-8	6.931999e-4	2.567407e-5
28	8049582	7977438	AY533203		0.504632	4.041696e-8	7.003047e-4	2.501088e-5
29	8049582	7921936	NM_177398	LMX1A	0.504602	4.050428e-8	7.018176e-4	2.420061e-5
30	8049582	7940160	NM_015177	DTX4	0.504518	4.074952e-8	7.060669e-4	2.353556e-5
31	8049582	8164630	NM_198180	QRFP	0.504446	4.095857e-8	7.096892e-4	2.289320e-5
32	8049582	8097118	ENST00000415418		0.504225	4.161144e-8	7.210015e-4	2.253130e-5
33	8049582	8033635	NM_030957	ADAMTS10	0.503238	4.465000e-8	7.736506e-4	2.344396e-5
34	8049582	8071676	NM_004914	RAB36	0.503225	4.469157e-8	7.743709e-4	2.277561e-5
35	8049582	7997245			0.503002	4.540506e-8	7.867334e-4	2.247810e-5
36	8049582	8108483	NM_031467	SLC4A9	0.502470	4.715737e-8	8.170958e-4	2.269710e-5
37	8049582	7914433	NM_001703	BAI2	0.502235	4.795296e-8	8.308810e-4	2.245624e-5
38	8049582	7978064			0.501779	4.952872e-8	8.581841e-4	2.258379e-5
39	8049582	7897691	NM_020780	PTCHD2	0.499975	5.627142e-8	9.750148e-4	2.500038e-5
40	8049582	8004325	NM_001143760	EIF5A	0.499951	5.636573e-8	9.766490e-4	2.441623e-5
41	8049582	8049071			0.499337	5.885668e-8	1.019810e-3	2.487341e-5
42	8049582	8082163	ENST00000384275		0.499041	6.009582e-8	1.041280e-3	2.479239e-5
43	8049582	8038093	NM_001080434	LMTK3	0.499025	6.016389e-8	1.042460e-3	2.424325e-5
44	8049582	7941401	NM_004561	OVOL1	0.498979	6.035709e-8	1.045807e-3	2.376835e-5
45	8049582	7992302	NM_020825	CRAMP1L	0.498717	6.148094e-8	1.065280e-3	2.367289e-5
46	8049582	8015196	NM_030967	KRTAP1-1	0.498667	6.169591e-8	1.069005e-3	2.323924e-5
47	8049582	8019578	NM_030967	KRTAP1-1	0.498667	6.169591e-8	1.069005e-3	2.274479e-5
48	8049582	8124859	NM_014070	C6orf15	0.498228	6.362859e-8	1.102493e-3	2.296860e-5
49	8049582	8028325	NM_033520	C19orf33	0.497282	6.798183e-8	1.177921e-3	2.403921e-5
50	8049582	8049166	NM_005199	CHRNG	0.497037	6.916062e-8	1.198346e-3	2.396692e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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