[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2031	8082926	NM_004189	SOX14		SRY (sex determining region Y)-box 14

Fetching correlation data, please wait...
Getting list of correlations for id 2031.
Getting list of p-values for id 2031.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.154 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8082926	7998414	ENST00000428636		0.761013	4.499287e-21	7.795915e-17	7.795915e-17
2	8082926	8159531	NM_207510	LCNL1	0.735275	4.226665e-19	7.323543e-15	3.661772e-15
3	8082926	7927383	NM_153034	ZNF488	0.732211	7.008388e-19	1.214343e-14	4.047812e-15
4	8082926	8131056	NM_017781	CYP2W1	0.728709	1.238652e-18	2.146213e-14	5.365532e-15
5	8082926	8038292	NM_033043	CGB5	0.728563	1.268220e-18	2.197446e-14	4.394891e-15
6	8082926	8038280	NM_000737	CGB	0.723544	2.823693e-18	4.892613e-14	8.154355e-15
7	8082926	8049509	NM_015893	PRLH	0.721061	4.168891e-18	7.223438e-14	1.031920e-14
8	8082926	7971150	NM_005780	LHFP	0.718718	5.997111e-18	1.039119e-13	1.298899e-14
9	8082926	7978056	BC144336	ZFHX2	0.718414	6.286090e-18	1.089191e-13	1.210212e-14
10	8082926	8038299	NM_033142	CGB7	0.715733	9.482699e-18	1.643067e-13	1.643067e-14
11	8082926	8049942	NM_080741	NEU4	0.713122	1.409043e-17	2.441448e-13	2.219499e-14
12	8082926	8030187	NM_033043	CGB5	0.710592	2.059347e-17	3.568231e-13	2.973526e-14
13	8082926	8049934	NM_022134	GAL3ST2	0.710301	2.150483e-17	3.726143e-13	2.866263e-14
14	8082926	7930790	NM_006229	PNLIPRP1	0.710196	2.184442e-17	3.784982e-13	2.703559e-14
15	8082926	8115691	NM_003062	SLIT3	0.709364	2.472021e-17	4.283271e-13	2.855514e-14
16	8082926	8065344	NM_021784	FOXA2	0.708361	2.867989e-17	4.969365e-13	3.105853e-14
17	8082926	8042335	NM_003375	VDAC2	-0.706337	3.863389e-17	6.694093e-13	3.937702e-14
18	8082926	8142747	NM_006193	PAX4	0.705764	4.201246e-17	7.279499e-13	4.044166e-14
19	8082926	8060126	NM_198998	AQP12A	0.705330	4.476572e-17	7.756556e-13	4.082398e-14
20	8082926	8131096	NM_001128636	ELFN1	0.704480	5.066538e-17	8.778790e-13	4.389395e-14
21	8082926	8002845	NM_001025200	CTRB2	0.704167	5.302153e-17	9.187040e-13	4.374781e-14
22	8082926	8049670	NM_002081	GPC1	0.703690	5.682518e-17	9.846100e-13	4.475500e-14
23	8082926	8089729	NM_001015887	IGSF11	0.702913	6.357952e-17	1.101642e-12	4.789749e-14
24	8082926	8037732	NM_001029861	NANOS2	0.699108	1.096997e-16	1.900767e-12	7.919861e-14
25	8082926	8070786	NM_198688	KRTAP10-6	0.698944	1.123006e-16	1.945833e-12	7.783331e-14
26	8082926	8107530	ENST00000365222		0.698184	1.250808e-16	2.167275e-12	8.335675e-14
27	8082926	7937667	NM_003957	BRSK2	0.697560	1.366281e-16	2.367355e-12	8.767981e-14
28	8082926	8070482	NR_027272	C21orf129	0.697089	1.460322e-16	2.530300e-12	9.036785e-14
29	8082926	7921155	NM_014215	INSRR	0.696190	1.657340e-16	2.871674e-12	9.902323e-14
30	8082926	8004842	NM_173728	ARHGEF15	0.696057	1.688433e-16	2.925548e-12	9.751825e-14
31	8082926	8131506	NM_152745	NXPH1	0.695727	1.768585e-16	3.064427e-12	9.885248e-14
32	8082926	7997533	NM_013370	OSGIN1	0.695705	1.774079e-16	3.073947e-12	9.606086e-14
33	8082926	8159086	NM_014694	ADAMTSL2	0.694004	2.250165e-16	3.898861e-12	1.181473e-13
34	8082926	7936762	NM_001001976	ATE1	-0.693279	2.488955e-16	4.312612e-12	1.268415e-13
35	8082926	8151625	AF495523	REXO1L1	0.693275	2.490111e-16	4.314615e-12	1.232747e-13
36	8082926	8151605	AF495523	REXO1L1	0.693275	2.490111e-16	4.314615e-12	1.198504e-13
37	8082926	8151621	AF495523	REXO1L1	0.693275	2.490111e-16	4.314615e-12	1.166112e-13
38	8082926	8151613	AF495523	REXO1L1	0.693275	2.490111e-16	4.314615e-12	1.135425e-13
39	8082926	8151617	AF495523	REXO1L1	0.693275	2.490111e-16	4.314615e-12	1.106311e-13
40	8082926	8090343	NM_014079	KLF15	0.692936	2.610150e-16	4.522607e-12	1.130652e-13
41	8082926	8035801	ENST00000364165		0.692708	2.693879e-16	4.667683e-12	1.138459e-13
42	8082926	8060533	BC021178	LOC100288797	0.692426	2.801284e-16	4.853784e-12	1.155663e-13
43	8082926	8125805	NM_000841	GRM4	0.692049	2.951444e-16	5.113967e-12	1.189295e-13
44	8082926	8026265	NM_080864	RLN3	0.691783	3.061695e-16	5.304999e-12	1.205682e-13
45	8082926	8137330	ENST00000356058		0.691695	3.099274e-16	5.370113e-12	1.193358e-13
46	8082926	7954645	NM_001080509	TSPAN11	0.691402	3.226914e-16	5.591274e-12	1.215494e-13
47	8082926	7916304	NM_147193	GLIS1	0.690853	3.480462e-16	6.030597e-12	1.283106e-13
48	8082926	7934852	NM_005271	GLUD1	-0.690737	3.536102e-16	6.127004e-12	1.276459e-13
49	8082926	8060101	AK092442	PP14571	0.690575	3.615601e-16	6.264752e-12	1.278521e-13
50	8082926	8049729	NM_198998	AQP12A	0.690449	3.679032e-16	6.374659e-12	1.274932e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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