[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5755	8017582	NM_018469	TEX2		testis expressed 2

Fetching correlation data, please wait...
Getting list of correlations for id 5755.
Getting list of p-values for id 5755.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.100 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8017582	8163896	NM_004099	STOM	0.596145	1.953216e-11	3.384338e-7	3.384338e-7
2	8017582	7898211	NM_032341	DDI2	0.594225	2.350860e-11	4.073334e-7	2.036667e-7
3	8017582	7970317	NR_026580	TFDP1	0.581225	7.989889e-11	1.384408e-6	4.614694e-7
4	8017582	8013533	ENST00000302153		-0.566950	2.881704e-10	4.993128e-6	1.248282e-6
5	8017582	7974461	NR_003225	LGALS3	0.562583	4.215153e-10	7.303595e-6	1.460719e-6
6	8017582	7979732	NM_006370	VTI1B	0.544238	1.963975e-9	3.402979e-5	5.671631e-6
7	8017582	8123760	NR_026970	LY86AS	-0.544191	1.971489e-9	3.415999e-5	4.879998e-6
8	8017582	7907680	NM_014864	FAM20B	0.543339	2.112861e-9	3.660955e-5	4.576194e-6
9	8017582	8145854	NM_007198	PROSC	0.541515	2.448776e-9	4.242994e-5	4.714438e-6
10	8017582	7968254	NM_152705	POLR1D	0.541211	2.509580e-9	4.348350e-5	4.348350e-6
11	8017582	7919193	NR_002212	NUDT4P1	0.541033	2.545764e-9	4.411046e-5	4.010042e-6
12	8017582	7985147	NM_018602	DNAJA4	0.538493	3.121024e-9	5.407798e-5	4.506498e-6
13	8017582	8108847	NM_183401	RNF14	0.537517	3.373532e-9	5.845318e-5	4.496399e-6
14	8017582	8093643	NM_176801	ADD1	0.536956	3.527362e-9	6.111861e-5	4.365615e-6
15	8017582	8026122	NM_005053	RAD23A	0.536849	3.557662e-9	6.164360e-5	4.109574e-6
16	8017582	8119169	NM_017772	TBC1D22B	0.530749	5.748085e-9	9.959707e-5	6.224817e-6
17	8017582	8128683	NM_003795	SNX3	0.526568	7.942505e-9	1.376198e-4	8.095282e-6
18	8017582	7948534	NM_001923	DDB1	0.523196	1.027679e-8	1.780660e-4	9.892557e-6
19	8017582	8084345	NM_004068	AP2M1	0.521450	1.173076e-8	2.032588e-4	1.069783e-5
20	8017582	8165077	NM_144653	NACC2	-0.519535	1.355072e-8	2.347933e-4	1.173967e-5
21	8017582	8167407	NM_181532	ERAS	-0.518479	1.466807e-8	2.541537e-4	1.210256e-5
22	8017582	7956152	NM_006191	PA2G4	0.518124	1.506257e-8	2.609892e-4	1.186314e-5
23	8017582	8143387	NM_013446	MKRN1	0.517301	1.601643e-8	2.775167e-4	1.206595e-5
24	8017582	7926239	NM_001008211	OPTN	0.516619	1.685207e-8	2.919958e-4	1.216649e-5
25	8017582	8034299	NM_032377	ELOF1	0.516080	1.754052e-8	3.039247e-4	1.215699e-5
26	8017582	7938485	NM_014632	MICAL2	0.515590	1.818989e-8	3.151762e-4	1.212216e-5
27	8017582	7973545	NM_025230	DCAF11	0.513282	2.157101e-8	3.737608e-4	1.384299e-5
28	8017582	8011062	NM_130766	INPP5K	0.513223	2.166482e-8	3.753864e-4	1.340666e-5
29	8017582	8091452	NM_001079809	TMEM183B	0.512826	2.230720e-8	3.865168e-4	1.332817e-5
30	8017582	8153201	NM_012154	EIF2C2	0.512555	2.275517e-8	3.942788e-4	1.314263e-5
31	8017582	8062174	NM_198398	ERGIC3	0.512275	2.322743e-8	4.024617e-4	1.298264e-5
32	8017582	7942503	NM_016147	PPME1	0.512181	2.338966e-8	4.052726e-4	1.266477e-5
33	8017582	8023466	NM_001012515	FECH	0.512039	2.363307e-8	4.094903e-4	1.240880e-5
34	8017582	8156706	NM_003275	TMOD1	0.511662	2.429532e-8	4.209650e-4	1.238132e-5
35	8017582	8049574	NM_080678	UBE2F	0.510339	2.676154e-8	4.636973e-4	1.324849e-5
36	8017582	8153021	NM_003033	ST3GAL1	0.509032	2.943039e-8	5.099404e-4	1.416501e-5
37	8017582	8127158	NM_001498	GCLC	0.507547	3.277328e-8	5.678626e-4	1.534764e-5
38	8017582	8038278	NM_000894	LHB	-0.507355	3.323056e-8	5.757860e-4	1.515226e-5
39	8017582	7915468	NM_199342	CCDC23	0.506547	3.522593e-8	6.103597e-4	1.565025e-5
40	8017582	8026698	NM_001033549	C19orf62	0.506511	3.531660e-8	6.119308e-4	1.529827e-5
41	8017582	8144953	NM_001100161	XPO7	0.506479	3.539704e-8	6.133245e-4	1.495913e-5
42	8017582	7997272	NM_007285	GABARAPL2	0.505879	3.695889e-8	6.403868e-4	1.524730e-5
43	8017582	8172548	NM_015698	GPKOW	0.502412	4.735193e-8	8.204670e-4	1.908063e-5
44	8017582	8178526	NM_004639	BAT3	0.501791	4.948880e-8	8.574924e-4	1.948846e-5
45	8017582	8179782	NM_004639	BAT3	0.501791	4.948880e-8	8.574924e-4	1.905539e-5
46	8017582	8039961	NR_024080	ACP1	0.499584	5.784302e-8	1.002246e-3	2.178795e-5
47	8017582	8072113	NM_001013694	SRRD	0.497750	6.579517e-8	1.140033e-3	2.425602e-5
48	8017582	8142886	NM_003344	UBE2H	0.496856	7.004036e-8	1.213589e-3	2.528311e-5
49	8017582	7944560	NM_015313	ARHGEF12	0.496654	7.103382e-8	1.230803e-3	2.511843e-5
50	8017582	7989953	NM_024666	AAGAB	0.496045	7.411490e-8	1.284189e-3	2.568378e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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