[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2204	8148385	NM_003235	TG		thyroglobulin

Fetching correlation data, please wait...
Getting list of correlations for id 2204.
Getting list of p-values for id 2204.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8148385	7914667	NM_052896	CSMD2	0.713164	1.399969e-17	2.425726e-13	2.425726e-13
2	8148385	8096556	NM_015143	METAP1	-0.708042	3.006284e-17	5.208987e-13	2.604494e-13
3	8148385	8137783	NM_001097620	TMEM184A	0.694194	2.191459e-16	3.797142e-12	1.265714e-12
4	8148385	8043114	NM_031283	TCF7L1	0.693912	2.279210e-16	3.949187e-12	9.872967e-13
5	8148385	8120698	NM_133645	MTO1	-0.693577	2.387992e-16	4.137674e-12	8.275347e-13
6	8148385	7913450	NM_005529	HSPG2	0.693147	2.534977e-16	4.392355e-12	7.320591e-13
7	8148385	8033674	NM_024690	MUC16	0.690589	3.609111e-16	6.253507e-12	8.933581e-13
8	8148385	7970262	NM_001008895	CUL4A	-0.690425	3.690946e-16	6.395302e-12	7.994127e-13
9	8148385	7936762	NM_001001976	ATE1	-0.690319	3.745199e-16	6.489306e-12	7.210340e-13
10	8148385	7951987	NM_001077263	TMPRSS13	0.689012	4.478938e-16	7.760656e-12	7.760656e-13
11	8148385	7955896	NM_016057	COPZ1	-0.688956	4.512939e-16	7.819570e-12	7.108700e-13
12	8148385	8067602	NM_152864	NKAIN4	0.688825	4.594480e-16	7.960856e-12	6.634046e-13
13	8148385	8023561	NM_005570	LMAN1	-0.685720	6.999409e-16	1.212788e-11	9.329136e-13
14	8148385	7970241	NM_000504	F10	0.682295	1.106848e-15	1.917836e-11	1.369883e-12
15	8148385	7897066	NR_024445	LOC100128003	0.681830	1.177257e-15	2.039834e-11	1.359889e-12
16	8148385	8163086	NM_032012	C9orf5	-0.681702	1.197407e-15	2.074747e-11	1.296717e-12
17	8148385	7960744	NM_001733	C1R	0.676822	2.272701e-15	3.937909e-11	2.316417e-12
18	8148385	7987701	NM_016642	SPTBN5	0.674068	3.245422e-15	5.623343e-11	3.124079e-12
19	8148385	8086434	NM_144719	CCDC13	0.673672	3.415066e-15	5.917284e-11	3.114360e-12
20	8148385	7951859	NM_000482	APOA4	0.671636	4.431379e-15	7.678251e-11	3.839125e-12
21	8148385	7960716	NM_001144831	PHB2	-0.671237	4.662297e-15	8.078362e-11	3.846839e-12
22	8148385	7987405	NM_005739	RASGRP1	-0.670275	5.268252e-15	9.128301e-11	4.149228e-12
23	8148385	8127787	NM_015525	IBTK	-0.669525	5.793375e-15	1.003818e-10	4.364427e-12
24	8148385	8016414	NM_003726	SKAP1	-0.668688	6.438653e-15	1.115625e-10	4.648439e-12
25	8148385	7906307	NM_018240	KIRREL	0.668180	6.864087e-15	1.189340e-10	4.757361e-12
26	8148385	7928429	NM_002658	PLAU	0.667971	7.047161e-15	1.221062e-10	4.696391e-12
27	8148385	7966542	NM_004658	RASAL1	0.667273	7.692024e-15	1.332797e-10	4.936285e-12
28	8148385	8066451	NM_182970	RIMS4	0.667264	7.700843e-15	1.334325e-10	4.765447e-12
29	8148385	7937560	NM_002457	MUC2	0.666160	8.840643e-15	1.531818e-10	5.282132e-12
30	8148385	7955305	NM_001652	AQP6	0.666008	9.009519e-15	1.561079e-10	5.203598e-12
31	8148385	7943969	NM_213621	HTR3A	0.665630	9.444199e-15	1.636396e-10	5.278698e-12
32	8148385	8138613	NM_015550	OSBPL3	-0.665147	1.002955e-14	1.737820e-10	5.430687e-12
33	8148385	8083090	NM_001080412	ZBTB38	-0.664829	1.043336e-14	1.807789e-10	5.478148e-12
34	8148385	8083523	NM_003875	GMPS	-0.664738	1.055262e-14	1.828452e-10	5.377799e-12
35	8148385	7935361	NM_003061	SLIT1	0.664595	1.074088e-14	1.861073e-10	5.317351e-12
36	8148385	8037688	NM_030785	RSPH6A	0.664310	1.112748e-14	1.928059e-10	5.355720e-12
37	8148385	7903884	NM_032414	PROK1	0.663725	1.196243e-14	2.072730e-10	5.601973e-12
38	8148385	8084496	NM_003741	CHRD	0.663225	1.272507e-14	2.204873e-10	5.802297e-12
39	8148385	7996947	NM_030579	CYB5B	-0.662668	1.362917e-14	2.361526e-10	6.055194e-12
40	8148385	7952227	NM_015645	C1QTNF5	0.661738	1.528058e-14	2.647667e-10	6.619166e-12
41	8148385	7955184	NM_006262	PRPH	0.661221	1.627917e-14	2.820691e-10	6.879735e-12
42	8148385	7960933	NM_002355	M6PR	-0.660832	1.707346e-14	2.958318e-10	7.043614e-12
43	8148385	8158666	AK128680	HMCN2	0.660815	1.710854e-14	2.964396e-10	6.893944e-12
44	8148385	8077192	NM_000482	APOA4	0.659802	1.936183e-14	3.354824e-10	7.624600e-12
45	8148385	7960099	NM_170683	P2RX2	0.659146	2.096811e-14	3.633145e-10	8.073656e-12
46	8148385	7978997	NM_198794	MAP4K5	-0.658726	2.206552e-14	3.823293e-10	8.311506e-12
47	8148385	8089128	NM_014820	TOMM70A	-0.657988	2.413060e-14	4.181110e-10	8.895978e-12
48	8148385	8030220	NM_003660	PPFIA3	0.657378	2.597495e-14	4.500680e-10	9.376416e-12
49	8148385	8038770	NM_022046	KLK14	0.657092	2.688647e-14	4.658619e-10	9.507386e-12
50	8148385	7931930	NM_006257	PRKCQ	-0.656408	2.919581e-14	5.058758e-10	1.011752e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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