[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2388	7901091	NM_025077	TOE1		target of EGR1, member 1 (nuclear)

Fetching correlation data, please wait...
Getting list of correlations for id 2388.
Getting list of p-values for id 2388.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.093 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7901091	7912303	NM_213566	DFFA	0.451275	1.355181e-6	2.348123e-2	2.348123e-2
2	7901091	8139392	NM_019082	DDX56	0.427641	5.361990e-6	9.290720e-2	4.645360e-2
3	7901091	8167125	NM_004651	USP11	0.415528	1.043561e-5	1.808177e-1	6.027258e-2
4	7901091	7922040	NM_198053	CD247	0.415026	1.072202e-5	1.857804e-1	4.644509e-2
5	7901091	8062576	NM_021931	DHX35	0.411990	1.261567e-5	2.185917e-1	4.371833e-2
6	7901091	8116520	NM_006098	GNB2L1	0.395345	2.993632e-5	5.187066e-1	8.645111e-2
7	7901091	8136727			0.384668	5.088490e-5	8.816826e-1	1.259547e-1
8	7901091	8101622	NM_138501	TECR	0.384454	5.141726e-5	8.909069e-1	1.113634e-1
9	7901091	8005471	NM_001031	RPS28	0.381022	6.073619e-5	1.052376e+0	1.169307e-1
10	7901091	8058973	NM_001105537	ZNF142	0.376223	7.642633e-5	1.324239e+0	1.324239e-1
11	7901091	8155169	NM_021111	RECK	0.376210	7.647539e-5	1.325089e+0	1.204626e-1
12	7901091	8025395	NM_001031	RPS28	0.372949	8.921835e-5	1.545886e+0	1.288239e-1
13	7901091	8019183	NM_001614	ACTG1	0.372719	9.018749e-5	1.562679e+0	1.202061e-1
14	7901091	8072170	NM_001039570	KREMEN1	-0.372477	9.121752e-5	1.580526e+0	1.128947e-1
15	7901091	8161017	NM_014450	SIT1	0.371335	9.623304e-5	1.667430e+0	1.111620e-1
16	7901091	8117377	NM_005321	HIST1H1E	0.370773	9.879159e-5	1.711762e+0	1.069851e-1
17	7901091	7942824	NM_001031	RPS28	0.370319	1.009057e-4	1.748394e+0	1.028467e-1
18	7901091	7920123	NM_002966	S100A10	0.369242	1.060930e-4	1.838274e+0	1.021263e-1
19	7901091	8038086	NM_000979	RPL18	0.367498	1.150188e-4	1.992930e+0	1.048911e-1
20	7901091	7925876	NM_002627	PFKP	0.366920	1.181275e-4	2.046795e+0	1.023398e-1
21	7901091	8167305	NM_006579	EBP	0.364613	1.313241e-4	2.275453e+0	1.083549e-1
22	7901091	7949545	NM_032325	EIF1AD	0.364383	1.327158e-4	2.299566e+0	1.045257e-1
23	7901091	8081710	NM_017699	SIDT1	0.363716	1.368181e-4	2.370647e+0	1.030716e-1
24	7901091	7934215	NM_014767	SPOCK2	0.362315	1.458280e-4	2.526761e+0	1.052817e-1
25	7901091	7995755	NM_018233	OGFOD1	0.361949	1.482663e-4	2.569010e+0	1.027604e-1
26	7901091	8000869	NM_052838	SEPT1	0.360238	1.601934e-4	2.775670e+0	1.067565e-1
27	7901091	8101429	NM_016619	PLAC8	0.354719	2.050093e-4	3.552197e+0	1.315628e-1
28	7901091	8024444	AY358234	LOC100129831	-0.354313	2.087203e-4	3.616496e+0	1.291606e-1
29	7901091	8076374	NM_005008	NHP2L1	0.353926	2.123182e-4	3.678837e+0	1.268564e-1
30	7901091	8061136	NM_002823	PTMA	0.351424	2.370218e-4	4.106877e+0	1.368959e-1
31	7901091	7908968	NM_017773	LAX1	0.351391	2.373618e-4	4.112768e+0	1.326699e-1
32	7901091	7937476	NM_001004	RPLP2	0.351211	2.392495e-4	4.145476e+0	1.295461e-1
33	7901091	8166989	NM_001129898	ZNF673	0.350659	2.450875e-4	4.246631e+0	1.286858e-1
34	7901091	hsa-miR-671-3p			0.349079	2.625571e-4	4.549327e+0	1.338037e-1
35	7901091	8025895	NM_002743	PRKCSH	0.347050	2.866806e-4	4.967315e+0	1.419233e-1
36	7901091	7929593	NR_026712	RPL13AP5	0.345659	3.043823e-4	5.274032e+0	1.465009e-1
37	7901091	7966938	NM_006836	GCN1L1	0.345054	3.123915e-4	5.412808e+0	1.462921e-1
38	7901091	8031483	NM_001136134	RPL28	0.344556	3.191276e-4	5.529524e+0	1.455138e-1
39	7901091	8066038	NM_032214	SLA2	0.343952	3.274898e-4	5.674416e+0	1.454978e-1
40	7901091	8043743	ENST00000446623		-0.343888	3.283886e-4	5.689990e+0	1.422498e-1
41	7901091	7940717	NM_001012661	SLC3A2	0.343522	3.335567e-4	5.779536e+0	1.409643e-1
42	7901091	7934161	NM_005041	PRF1	0.342905	3.424402e-4	5.933462e+0	1.412729e-1
43	7901091	7949060	NM_138689	PPP1R14B	-0.341859	3.580188e-4	6.203391e+0	1.442649e-1
44	7901091	8042874	NM_022492	TTC31	0.341230	3.676881e-4	6.370932e+0	1.447939e-1
45	7901091	8063115	NM_004994	MMP9	-0.341031	3.708032e-4	6.424907e+0	1.427757e-1
46	7901091	8071566	NM_014337	PPIL2	0.338508	4.123970e-4	7.145602e+0	1.553392e-1
47	7901091	8079294	NM_015004	EXOSC7	0.338111	4.193087e-4	7.265362e+0	1.545822e-1
48	7901091	8121563	NM_002356	MARCKS	-0.335602	4.655865e-4	8.067218e+0	1.680670e-1
49	7901091	7917080	S72422		0.335185	4.737330e-4	8.208372e+0	1.675178e-1
50	7901091	8027778	NM_144779	FXYD5	0.334675	4.838466e-4	8.383610e+0	1.676722e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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