[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7491	8117869	NM_172016	TRIM39		tripartite motif-containing 39
7492	8177770	NM_172016	TRIM39		tripartite motif-containing 39
7493	8179088	NM_172016	TRIM39		tripartite motif-containing 39

Fetching correlation data, please wait...
Getting list of correlations for id 7491.
Getting list of p-values for id 7491.
1 of 3 done.
Getting list of correlations for id 7492.
Getting list of p-values for id 7492.
2 of 3 done.
Getting list of correlations for id 7493.
Getting list of p-values for id 7493.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.204 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179088	8117869	NM_172016	TRIM39	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8177770	8179088	NM_172016	TRIM39	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8179088	8177770	NM_172016	TRIM39	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8117869	8177770	NM_172016	TRIM39	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8117869	8179088	NM_172016	TRIM39	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8177770	8117869	NM_172016	TRIM39	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8177770	8117485	NM_078476	BTN2A1	0.671066	4.764954e-15	2.476871e-10	3.538387e-11
8	8179088	8117485	NM_078476	BTN2A1	0.671066	4.764954e-15	2.476871e-10	3.096089e-11
9	8117869	8117485	NM_078476	BTN2A1	0.671066	4.764954e-15	2.476871e-10	2.752079e-11
10	8117869	7921752	NM_001025598	ARHGAP30	0.626512	8.776796e-13	4.562266e-8	4.562266e-9
11	8177770	7921752	NM_001025598	ARHGAP30	0.626512	8.776796e-13	4.562266e-8	4.147515e-9
12	8179088	7921752	NM_001025598	ARHGAP30	0.626512	8.776796e-13	4.562266e-8	3.801889e-9
13	8177770	8104115	ENST00000364215		0.622100	1.406717e-12	7.312257e-8	5.624813e-9
14	8179088	8104115	ENST00000364215		0.622100	1.406717e-12	7.312257e-8	5.223040e-9
15	8117869	8104115	ENST00000364215		0.622100	1.406717e-12	7.312257e-8	4.874838e-9
16	8177770	7990027	NR_026808	C15orf28	0.618139	2.134839e-12	1.109711e-7	6.935693e-9
17	8179088	7990027	NR_026808	C15orf28	0.618139	2.134839e-12	1.109711e-7	6.527711e-9
18	8117869	7990027	NR_026808	C15orf28	0.618139	2.134839e-12	1.109711e-7	6.165060e-9
19	8179088	8063369	NM_018683	RNF114	0.617362	2.315205e-12	1.203467e-7	6.334036e-9
20	8117869	8063369	NM_018683	RNF114	0.617362	2.315205e-12	1.203467e-7	6.017334e-9
21	8177770	8063369	NM_018683	RNF114	0.617362	2.315205e-12	1.203467e-7	5.730794e-9
22	8117869	8127145	NM_021814	ELOVL5	0.613856	3.329758e-12	1.730842e-7	7.867462e-9
23	8177770	8127145	NM_021814	ELOVL5	0.613856	3.329758e-12	1.730842e-7	7.525398e-9
24	8179088	8127145	NM_021814	ELOVL5	0.613856	3.329758e-12	1.730842e-7	7.211840e-9
25	8177770	8093086	NM_005017	PCYT1A	0.613390	3.493492e-12	1.815952e-7	7.263808e-9
26	8117869	8093086	NM_005017	PCYT1A	0.613390	3.493492e-12	1.815952e-7	6.984431e-9
27	8179088	8093086	NM_005017	PCYT1A	0.613390	3.493492e-12	1.815952e-7	6.725748e-9
28	8179088	7900468	NM_001142588	NFYC	0.610081	4.899827e-12	2.546979e-7	9.096353e-9
29	8117869	7900468	NM_001142588	NFYC	0.610081	4.899827e-12	2.546979e-7	8.782686e-9
30	8177770	7900468	NM_001142588	NFYC	0.610081	4.899827e-12	2.546979e-7	8.489930e-9
31	8177770	8042772	NM_213622	STAMBP	0.606948	6.725836e-12	3.496157e-7	1.127792e-8
32	8117869	8042772	NM_213622	STAMBP	0.606948	6.725836e-12	3.496157e-7	1.092549e-8
33	8179088	8042772	NM_213622	STAMBP	0.606948	6.725836e-12	3.496157e-7	1.059441e-8
34	8117869	7973660	NM_016576	GMPR2	0.606151	7.286096e-12	3.787386e-7	1.113937e-8
35	8177770	7973660	NM_016576	GMPR2	0.606151	7.286096e-12	3.787386e-7	1.082110e-8
36	8179088	7973660	NM_016576	GMPR2	0.606151	7.286096e-12	3.787386e-7	1.052052e-8
37	8179088	8087473	NM_153273	IP6K1	0.596511	1.885031e-11	9.798581e-7	2.648265e-8
38	8177770	8087473	NM_153273	IP6K1	0.596511	1.885031e-11	9.798581e-7	2.578574e-8
39	8117869	8087473	NM_153273	IP6K1	0.596511	1.885031e-11	9.798581e-7	2.512457e-8
40	8117869	8084607	NM_021627	SENP2	0.595579	2.063211e-11	1.072478e-6	2.681195e-8
41	8177770	8084607	NM_021627	SENP2	0.595579	2.063211e-11	1.072478e-6	2.615800e-8
42	8179088	8084607	NM_021627	SENP2	0.595579	2.063211e-11	1.072478e-6	2.553519e-8
43	8117869	8079149	ENST00000410398		0.593960	2.411572e-11	1.253559e-6	2.915254e-8
44	8177770	8079149	ENST00000410398		0.593960	2.411572e-11	1.253559e-6	2.848999e-8
45	8179088	8079149	ENST00000410398		0.593960	2.411572e-11	1.253559e-6	2.785688e-8
46	8179088	7922976	NM_000963	PTGS2	0.590466	3.367361e-11	1.750388e-6	3.805191e-8
47	8117869	7922976	NM_000963	PTGS2	0.590466	3.367361e-11	1.750388e-6	3.724230e-8
48	8177770	7922976	NM_000963	PTGS2	0.590466	3.367361e-11	1.750388e-6	3.646642e-8
49	8117869	7973214	NM_014828	TOX4	0.590008	3.516853e-11	1.828096e-6	3.730807e-8
50	8177770	7973214	NM_014828	TOX4	0.590008	3.516853e-11	1.828096e-6	3.656191e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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