[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 7492.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7492	8177770	NM_172016	TRIM39		tripartite motif-containing 39

Fetching correlation data, please wait...
Getting list of correlations for id 7492.
Getting list of p-values for id 7492.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.097 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177770	8179088	NM_172016	TRIM39	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8177770	8117869	NM_172016	TRIM39	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8177770	8117485	NM_078476	BTN2A1	0.671066	4.764954e-15	8.256236e-11	2.752079e-11
4	8177770	7921752	NM_001025598	ARHGAP30	0.626512	8.776796e-13	1.520755e-8	3.801889e-9
5	8177770	8104115	ENST00000364215		0.622100	1.406717e-12	2.437419e-8	4.874838e-9
6	8177770	7990027	NR_026808	C15orf28	0.618139	2.134839e-12	3.699036e-8	6.165060e-9
7	8177770	8063369	NM_018683	RNF114	0.617362	2.315205e-12	4.011556e-8	5.730794e-9
8	8177770	8127145	NM_021814	ELOVL5	0.613856	3.329758e-12	5.769472e-8	7.211840e-9
9	8177770	8093086	NM_005017	PCYT1A	0.613390	3.493492e-12	6.053173e-8	6.725748e-9
10	8177770	7900468	NM_001142588	NFYC	0.610081	4.899827e-12	8.489930e-8	8.489930e-9
11	8177770	8042772	NM_213622	STAMBP	0.606948	6.725836e-12	1.165386e-7	1.059441e-8
12	8177770	7973660	NM_016576	GMPR2	0.606151	7.286096e-12	1.262462e-7	1.052052e-8
13	8177770	8087473	NM_153273	IP6K1	0.596511	1.885031e-11	3.266194e-7	2.512457e-8
14	8177770	8084607	NM_021627	SENP2	0.595579	2.063211e-11	3.574926e-7	2.553519e-8
15	8177770	8079149	ENST00000410398		0.593960	2.411572e-11	4.178531e-7	2.785688e-8
16	8177770	7922976	NM_000963	PTGS2	0.590466	3.367361e-11	5.834627e-7	3.646642e-8
17	8177770	7973214	NM_014828	TOX4	0.590008	3.516853e-11	6.093652e-7	3.584501e-8
18	8177770	7926189	NM_018144	SEC61A2	0.589179	3.804266e-11	6.591651e-7	3.662029e-8
19	8177770	7930162	NM_017787	C10orf26	0.588425	4.085171e-11	7.078376e-7	3.725461e-8
20	8177770	8089911	NM_005335	HCLS1	0.586450	4.918208e-11	8.521779e-7	4.260890e-8
21	8177770	7997453	NM_002661	PLCG2	0.586409	4.937119e-11	8.554546e-7	4.073594e-8
22	8177770	8097417	NM_199320	PHF17	0.585080	5.590493e-11	9.686647e-7	4.403022e-8
23	8177770	8003771	ENST00000410853		0.584367	5.974063e-11	1.035126e-6	4.500547e-8
24	8177770	8013581	NM_174887	IFT20	0.584040	6.158610e-11	1.067102e-6	4.446260e-8
25	8177770	7947894	NM_198700	CELF1	0.581679	7.662547e-11	1.327690e-6	5.310758e-8
26	8177770	7956593	NM_006812	OS9	0.581460	7.818677e-11	1.354742e-6	5.210547e-8
27	8177770	7919888	NM_001038707	CDC42SE1	0.580968	8.181152e-11	1.417548e-6	5.250178e-8
28	8177770	8102006	NM_005908	MANBA	0.580641	8.430933e-11	1.460828e-6	5.217242e-8
29	8177770	7935647	NM_078470	COX15	0.580519	8.525784e-11	1.477263e-6	5.094009e-8
30	8177770	7975361	NM_014734	KIAA0247	0.580413	8.608791e-11	1.491645e-6	4.972151e-8
31	8177770	8146171	NM_001556	IKBKB	0.579709	9.183075e-11	1.591151e-6	5.132746e-8
32	8177770	7991427	NM_018668	VPS33B	0.578548	1.021113e-10	1.769282e-6	5.529007e-8
33	8177770	8078350	NM_001024847	TGFBR2	0.577958	1.077461e-10	1.866916e-6	5.657322e-8
34	8177770	7922669	NM_005819	STX6	0.575413	1.357030e-10	2.351325e-6	6.915663e-8
35	8177770	7963935	NM_032364	DNAJC14	0.575277	1.373771e-10	2.380334e-6	6.800953e-8
36	8177770	8083933	ENST00000410410		0.574109	1.526096e-10	2.644267e-6	7.345187e-8
37	8177770	7974533	NM_021255	PELI2	0.572706	1.730592e-10	2.998597e-6	8.104315e-8
38	8177770	7966268	NM_057169	GIT2	0.571775	1.880603e-10	3.258520e-6	8.575054e-8
39	8177770	7940191	NM_004177	STX3	0.570424	2.120849e-10	3.674795e-6	9.422552e-8
40	8177770	8056860	NM_003387	WIPF1	0.570347	2.135310e-10	3.699852e-6	9.249629e-8
41	8177770	7923453	NM_006618	KDM5B	0.570045	2.193288e-10	3.800310e-6	9.269049e-8
42	8177770	7900119	NM_005119	THRAP3	0.569653	2.270814e-10	3.934639e-6	9.368189e-8
43	8177770	7941243	NM_006268	DPF2	0.567890	2.653068e-10	4.596971e-6	1.069063e-7
44	8177770	8090630	NM_001017395	TMCC1	0.567296	2.795433e-10	4.843646e-6	1.100829e-7
45	8177770	7920472	NM_152263	TPM3	0.567285	2.798047e-10	4.848177e-6	1.077373e-7
46	8177770	8082431	NM_004637	RAB7A	0.566907	2.892549e-10	5.011920e-6	1.089548e-7
47	8177770	7963721	NM_020898	CALCOCO1	0.566318	3.045715e-10	5.277311e-6	1.122832e-7
48	8177770	7996725	NM_017803	DUS2L	0.565705	3.213452e-10	5.567948e-6	1.159989e-7
49	8177770	8108424	NM_001033112	PAIP2	0.565427	3.292410e-10	5.704760e-6	1.164237e-7
50	8177770	7914904	NM_032017	STK40	0.564586	3.542824e-10	6.138650e-6	1.227730e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation