[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2565	7925950	NM_053049	UCN3		urocortin 3 (stresscopin)

Fetching correlation data, please wait...
Getting list of correlations for id 2565.
Getting list of p-values for id 2565.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7925950	8071927	NM_005265	GGT1	0.731154	8.330781e-19	1.443474e-14	1.443474e-14
2	7925950	8045030	NM_001080527	MYO7B	0.697625	1.353712e-16	2.345576e-12	1.172788e-12
3	7925950	8029219	NM_173633	TMEM145	0.695313	1.874206e-16	3.247436e-12	1.082479e-12
4	7925950	8096556	NM_015143	METAP1	-0.694451	2.114143e-16	3.663175e-12	9.157939e-13
5	7925950	7994252	NM_001169	AQP8	0.689955	3.936785e-16	6.821267e-12	1.364253e-12
6	7925950	8174389	NM_033641	COL4A6	0.685734	6.985694e-16	1.210411e-11	2.017352e-12
7	7925950	8001014	NM_173502	PRSS36	0.685541	7.170018e-16	1.242349e-11	1.774784e-12
8	7925950	8054614	NM_022662	ANAPC1	-0.685532	7.178087e-16	1.243747e-11	1.554684e-12
9	7925950	8083523	NM_003875	GMPS	-0.685101	7.607255e-16	1.318109e-11	1.464566e-12
10	7925950	8097867	NM_015196	KIAA0922	-0.684428	8.325534e-16	1.442565e-11	1.442565e-12
11	7925950	7914516	NR_026850	MTMR9L	0.683149	9.879010e-16	1.711736e-11	1.556124e-12
12	7925950	8066393	NM_020433	JPH2	0.682891	1.022399e-15	1.771511e-11	1.476259e-12
13	7925950	7935834	NM_024895	PDZD7	0.682691	1.049941e-15	1.819233e-11	1.399410e-12
14	7925950	7946860	NM_000352	ABCC8	0.682667	1.053322e-15	1.825091e-11	1.303637e-12
15	7925950	7947991	NM_015231	NUP160	-0.681898	1.166658e-15	2.021467e-11	1.347645e-12
16	7925950	8032770	NM_016539	SIRT6	0.676974	2.228202e-15	3.860806e-11	2.413004e-12
17	7925950	8030220	NM_003660	PPFIA3	0.676073	2.504887e-15	4.340218e-11	2.553069e-12
18	7925950	7976844	hsa-mir-134		0.675216	2.798989e-15	4.849808e-11	2.694338e-12
19	7925950	8067011	NM_015339	ADNP	-0.673206	3.625694e-15	6.282240e-11	3.306442e-12
20	7925950	8016320	NM_203400	RPRML	0.672427	4.005999e-15	6.941194e-11	3.470597e-12
21	7925950	8125568	NM_080680	COL11A2	0.672148	4.150968e-15	7.192382e-11	3.424944e-12
22	7925950	7991893	BC016613	C16orf11	0.670356	5.214766e-15	9.035625e-11	4.107102e-12
23	7925950	8007584	NM_080863	ASB16	0.669457	5.843618e-15	1.012524e-10	4.402277e-12
24	7925950	7956229	NM_001135195	SLC39A5	0.669248	5.999757e-15	1.039578e-10	4.331575e-12
25	7925950	7975284	NM_152443	RDH12	0.667723	7.270096e-15	1.259690e-10	5.038758e-12
26	7925950	8006679	ENST00000411344		0.666990	7.968995e-15	1.380788e-10	5.310722e-12
27	7925950	7937560	NM_002457	MUC2	0.666541	8.429653e-15	1.460606e-10	5.409652e-12
28	7925950	7899101	NM_006314	CNKSR1	0.665428	9.685614e-15	1.678226e-10	5.993666e-12
29	7925950	7987511	NM_207380	C15orf52	0.665143	1.003417e-14	1.738620e-10	5.995242e-12
30	7925950	7919436	NM_178230	PPIAL4A	-0.665076	1.011884e-14	1.753291e-10	5.844304e-12
31	7925950	8025126	NM_144614	MBD3L2	0.664305	1.113503e-14	1.929366e-10	6.223761e-12
32	7925950	7981217	NM_018036	ATG2B	-0.663572	1.219179e-14	2.112471e-10	6.601471e-12
33	7925950	7987792	NM_178034	PLA2G4D	0.663412	1.243483e-14	2.154582e-10	6.529038e-12
34	7925950	7972177	NM_006237	POU4F1	0.663309	1.259388e-14	2.182141e-10	6.418063e-12
35	7925950	8010313	NM_178543	ENPP7	0.663100	1.292252e-14	2.239085e-10	6.397387e-12
36	7925950	8170753	NM_014370	SRPK3	0.662394	1.409647e-14	2.442495e-10	6.784707e-12
37	7925950	8014706	NM_007144	PCGF2	0.662102	1.461278e-14	2.531956e-10	6.843125e-12
38	7925950	7913450	NM_005529	HSPG2	0.661465	1.580057e-14	2.737765e-10	7.204644e-12
39	7925950	8141648	NM_015831	ACHE	0.661327	1.606937e-14	2.784340e-10	7.139334e-12
40	7925950	7939434	NM_018259	TTC17	-0.661232	1.625797e-14	2.817018e-10	7.042544e-12
41	7925950	8090366	NM_144639	UROC1	0.660768	1.720769e-14	2.981577e-10	7.272138e-12
42	7925950	8174263	NM_001024452	GLRA4	0.659805	1.935289e-14	3.353276e-10	7.983989e-12
43	7925950	8132270	NM_207172	NPSR1	0.659306	2.056464e-14	3.563236e-10	8.286595e-12
44	7925950	8016139	NM_001080443	KIF18B	0.658128	2.372537e-14	4.110896e-10	9.342945e-12
45	7925950	8066985	AK299337	FAM65C	0.657819	2.462889e-14	4.267448e-10	9.483218e-12
46	7925950	7959234	NM_000545	HNF1A	0.657639	2.516950e-14	4.361120e-10	9.480695e-12
47	7925950	8136401	NM_015135	NUP205	-0.657398	2.591308e-14	4.489959e-10	9.553105e-12
48	7925950	8033487	NM_032447	FBN3	0.656880	2.758377e-14	4.779440e-10	9.957167e-12
49	7925950	8067530	BC093856	C20orf200	0.656803	2.784153e-14	4.824102e-10	9.845106e-12
50	7925950	8051464	NM_019024	HEATR5B	-0.656171	3.004083e-14	5.205174e-10	1.041035e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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