[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
12175	8171139	NM_004729	ZBED1		zinc finger, BED-type containing 1
12176	8177029	NM_004729	ZBED1		zinc finger, BED-type containing 1

Fetching correlation data, please wait...
Getting list of correlations for id 12175.
Getting list of p-values for id 12175.
1 of 2 done.
Getting list of correlations for id 12176.
Getting list of p-values for id 12176.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177029	8171139	NM_004729	ZBED1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8171139	8177029	NM_004729	ZBED1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8171139	7948904	NR_002562	SNORD28	-0.513657	2.098335e-8	7.271570e-4	2.423857e-4
4	8177029	7948904	NR_002562	SNORD28	-0.513657	2.098335e-8	7.271570e-4	1.817892e-4
5	8177029	7993167	NM_024997	ATF7IP2	-0.504449	4.094995e-8	1.419080e-3	2.838159e-4
6	8171139	7993167	NM_024997	ATF7IP2	-0.504449	4.094995e-8	1.419080e-3	2.365133e-4
7	8177029	8014841	NM_004774	MED1	-0.498323	6.320487e-8	2.190302e-3	3.129002e-4
8	8171139	8014841	NM_004774	MED1	-0.498323	6.320487e-8	2.190302e-3	2.737877e-4
9	8177029	7996947	NM_030579	CYB5B	-0.493769	8.679097e-8	3.007654e-3	3.341838e-4
10	8171139	7996947	NM_030579	CYB5B	-0.493769	8.679097e-8	3.007654e-3	3.007654e-4
11	8171139	7948332	NM_004811	LPXN	-0.492535	9.450883e-8	3.275109e-3	2.977372e-4
12	8177029	7948332	NM_004811	LPXN	-0.492535	9.450883e-8	3.275109e-3	2.729257e-4
13	8171139	8119993	NM_007355	HSP90AB1	-0.481241	2.028975e-7	7.031209e-3	5.408623e-4
14	8177029	8119993	NM_007355	HSP90AB1	-0.481241	2.028975e-7	7.031209e-3	5.022292e-4
15	8177029	7990273	NM_004809	STOML1	0.477112	2.664510e-7	9.233593e-3	6.155729e-4
16	8171139	7990273	NM_004809	STOML1	0.477112	2.664510e-7	9.233593e-3	5.770996e-4
17	8177029	8042107	ENST00000434851		-0.473145	3.450431e-7	1.195712e-2	7.033603e-4
18	8171139	8042107	ENST00000434851		-0.473145	3.450431e-7	1.195712e-2	6.642847e-4
19	8171139	7970376	NM_032436	ZNF828	-0.472231	3.660404e-7	1.268476e-2	6.676191e-4
20	8177029	7970376	NM_032436	ZNF828	-0.472231	3.660404e-7	1.268476e-2	6.342381e-4
21	8177029	8064351	NM_177559	CSNK2A1	-0.470402	4.117768e-7	1.426971e-2	6.795101e-4
22	8171139	8064351	NM_177559	CSNK2A1	-0.470402	4.117768e-7	1.426971e-2	6.486233e-4
23	8177029	8096296	AY956764	HSP90AB3P	-0.466547	5.266108e-7	1.824917e-2	7.934422e-4
24	8171139	8096296	AY956764	HSP90AB3P	-0.466547	5.266108e-7	1.824917e-2	7.603821e-4
25	8177029	7957242	NM_001136262	ATXN7L3B	-0.464568	5.967495e-7	2.067976e-2	8.271902e-4
26	8171139	7957242	NM_001136262	ATXN7L3B	-0.464568	5.967495e-7	2.067976e-2	7.953752e-4
27	8177029	8169240	NM_002764	PRPS1	-0.463197	6.504883e-7	2.254202e-2	8.348897e-4
28	8171139	8169240	NM_002764	PRPS1	-0.463197	6.504883e-7	2.254202e-2	8.050722e-4
29	8177029	8174636	NM_006937	SUMO2	-0.459631	8.125580e-7	2.815838e-2	9.709788e-4
30	8171139	8174636	NM_006937	SUMO2	-0.459631	8.125580e-7	2.815838e-2	9.386128e-4
31	8171139	8051204	NM_014860	SUPT7L	-0.459071	8.412341e-7	2.915213e-2	9.403912e-4
32	8177029	8051204	NM_014860	SUPT7L	-0.459071	8.412341e-7	2.915213e-2	9.110039e-4
33	8171139	8066590	NM_003279	TNNC2	0.459011	8.443563e-7	2.926032e-2	8.866765e-4
34	8177029	8066590	NM_003279	TNNC2	0.459011	8.443563e-7	2.926032e-2	8.605977e-4
35	8171139	8145782	NM_032509	MAK16	-0.456830	9.659983e-7	3.347570e-2	9.564487e-4
36	8177029	8145782	NM_032509	MAK16	-0.456830	9.659983e-7	3.347570e-2	9.298807e-4
37	8171139	7940971	NM_033310	KCNK4	0.453527	1.182206e-6	4.096818e-2	1.107248e-3
38	8177029	7940971	NM_033310	KCNK4	0.453527	1.182206e-6	4.096818e-2	1.078110e-3
39	8171139	8094974	NM_001079839	OCIAD1	-0.449646	1.494943e-6	5.180576e-2	1.328353e-3
40	8177029	8094974	NM_001079839	OCIAD1	-0.449646	1.494943e-6	5.180576e-2	1.295144e-3
41	8177029	8150433	NM_152568	NKX6-3	0.448880	1.565309e-6	5.424422e-2	1.323030e-3
42	8171139	8150433	NM_152568	NKX6-3	0.448880	1.565309e-6	5.424422e-2	1.291529e-3
43	8171139	8117888	NM_006325	RAN	-0.447095	1.741501e-6	6.034997e-2	1.403488e-3
44	8177029	8117888	NM_006325	RAN	-0.447095	1.741501e-6	6.034997e-2	1.371590e-3
45	8171139	8145652	NM_015344	LEPROTL1	-0.445209	1.948055e-6	6.750791e-2	1.500176e-3
46	8177029	8145652	NM_015344	LEPROTL1	-0.445209	1.948055e-6	6.750791e-2	1.467563e-3
47	8171139	7995755	NM_018233	OGFOD1	-0.443954	2.098205e-6	7.271120e-2	1.547047e-3
48	8177029	7995755	NM_018233	OGFOD1	-0.443954	2.098205e-6	7.271120e-2	1.514817e-3
49	8171139	7952325	NM_006597	HSPA8	-0.443584	2.144421e-6	7.431278e-2	1.516587e-3
50	8177029	7952325	NM_006597	HSPA8	-0.443584	2.144421e-6	7.431278e-2	1.486256e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation