[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12176.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12176	8177029	NM_004729	ZBED1		zinc finger, BED-type containing 1

Fetching correlation data, please wait...
Getting list of correlations for id 12176.
Getting list of p-values for id 12176.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.090 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177029	8171139	NM_004729	ZBED1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8177029	7948904	NR_002562	SNORD28	-0.513657	2.098335e-8	3.635785e-4	1.817892e-4
3	8177029	7993167	NM_024997	ATF7IP2	-0.504449	4.094995e-8	7.095398e-4	2.365133e-4
4	8177029	8014841	NM_004774	MED1	-0.498323	6.320487e-8	1.095151e-3	2.737877e-4
5	8177029	7996947	NM_030579	CYB5B	-0.493769	8.679097e-8	1.503827e-3	3.007654e-4
6	8177029	7948332	NM_004811	LPXN	-0.492535	9.450883e-8	1.637554e-3	2.729257e-4
7	8177029	8119993	NM_007355	HSP90AB1	-0.481241	2.028975e-7	3.515605e-3	5.022292e-4
8	8177029	7990273	NM_004809	STOML1	0.477112	2.664510e-7	4.616797e-3	5.770996e-4
9	8177029	8042107	ENST00000434851		-0.473145	3.450431e-7	5.978562e-3	6.642847e-4
10	8177029	7970376	NM_032436	ZNF828	-0.472231	3.660404e-7	6.342381e-3	6.342381e-4
11	8177029	8064351	NM_177559	CSNK2A1	-0.470402	4.117768e-7	7.134856e-3	6.486233e-4
12	8177029	8096296	AY956764	HSP90AB3P	-0.466547	5.266108e-7	9.124585e-3	7.603821e-4
13	8177029	7957242	NM_001136262	ATXN7L3B	-0.464568	5.967495e-7	1.033988e-2	7.953752e-4
14	8177029	8169240	NM_002764	PRPS1	-0.463197	6.504883e-7	1.127101e-2	8.050722e-4
15	8177029	8174636	NM_006937	SUMO2	-0.459631	8.125580e-7	1.407919e-2	9.386128e-4
16	8177029	8051204	NM_014860	SUPT7L	-0.459071	8.412341e-7	1.457606e-2	9.110039e-4
17	8177029	8066590	NM_003279	TNNC2	0.459011	8.443563e-7	1.463016e-2	8.605977e-4
18	8177029	8145782	NM_032509	MAK16	-0.456830	9.659983e-7	1.673785e-2	9.298807e-4
19	8177029	7940971	NM_033310	KCNK4	0.453527	1.182206e-6	2.048409e-2	1.078110e-3
20	8177029	8094974	NM_001079839	OCIAD1	-0.449646	1.494943e-6	2.590288e-2	1.295144e-3
21	8177029	8150433	NM_152568	NKX6-3	0.448880	1.565309e-6	2.712211e-2	1.291529e-3
22	8177029	8117888	NM_006325	RAN	-0.447095	1.741501e-6	3.017499e-2	1.371590e-3
23	8177029	8145652	NM_015344	LEPROTL1	-0.445209	1.948055e-6	3.375396e-2	1.467563e-3
24	8177029	7995755	NM_018233	OGFOD1	-0.443954	2.098205e-6	3.635560e-2	1.514817e-3
25	8177029	7952325	NM_006597	HSPA8	-0.443584	2.144421e-6	3.715639e-2	1.486256e-3
26	8177029	7996744	NM_173163	NFATC3	-0.442799	2.245901e-6	3.891473e-2	1.496720e-3
27	8177029	7935230	NM_002860	ALDH18A1	-0.440943	2.504121e-6	4.338890e-2	1.606996e-3
28	8177029	8060533	BC021178	LOC100288797	0.440763	2.530611e-6	4.384789e-2	1.565996e-3
29	8177029	8048340	NM_005444	RQCD1	-0.439506	2.722972e-6	4.718094e-2	1.626929e-3
30	8177029	7907135	NM_199344	SFT2D2	-0.439132	2.782920e-6	4.821966e-2	1.607322e-3
31	8177029	8063566	NM_003610	RAE1	-0.438839	2.830656e-6	4.904678e-2	1.582154e-3
32	8177029	7920317	NM_004515	ILF2	-0.438837	2.831044e-6	4.905350e-2	1.532922e-3
33	8177029	7955646	NM_001417	EIF4B	-0.438686	2.855983e-6	4.948561e-2	1.499564e-3
34	8177029	8178322	NM_006937	SUMO2	-0.436979	3.152464e-6	5.462274e-2	1.606551e-3
35	8177029	7955637	NM_199187	KRT18	0.436435	3.252951e-6	5.636389e-2	1.610397e-3
36	8177029	8101376	NM_014933	SEC31A	-0.436169	3.303256e-6	5.723551e-2	1.589875e-3
37	8177029	8089701	NM_015642	ZBTB20	-0.435241	3.484319e-6	6.037279e-2	1.631697e-3
38	8177029	8072946	NM_016091	EIF3L	-0.434622	3.610132e-6	6.255276e-2	1.646125e-3
39	8177029	8009366	NM_015462	NOL11	-0.433570	3.834193e-6	6.643507e-2	1.703463e-3
40	8177029	8031712	NM_001145078	ZNF805	-0.433220	3.911576e-6	6.777588e-2	1.694397e-3
41	8177029	8019334	NM_178493	NOTUM	0.432930	3.976754e-6	6.890521e-2	1.680615e-3
42	8177029	8072189	NM_133455	EMID1	0.432652	4.040141e-6	7.000352e-2	1.666750e-3
43	8177029	8005951	NR_000013	SNORD42B	-0.431341	4.352577e-6	7.541710e-2	1.753886e-3
44	8177029	7963646	NM_015665	AAAS	-0.431180	4.392581e-6	7.611025e-2	1.729778e-3
45	8177029	7973056	NM_001641	APEX1	-0.430487	4.568224e-6	7.915361e-2	1.758969e-3
46	8177029	7908732	NM_018085	IPO9	-0.430287	4.620297e-6	8.005588e-2	1.740345e-3
47	8177029	8099551	NM_015688	FAM184B	0.429909	4.719805e-6	8.178007e-2	1.740001e-3
48	8177029	7995330			0.428919	4.990685e-6	8.647360e-2	1.801533e-3
49	8177029	8042737	NM_015120	ALMS1	-0.428773	5.031793e-6	8.718589e-2	1.779304e-3
50	8177029	7923621	NM_002256	KISS1	0.427564	5.385188e-6	9.330915e-2	1.866183e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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