[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12498.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12498	8124848	NM_003897	IER3		immediate early response 3

Fetching correlation data, please wait...
Getting list of correlations for id 12498.
Getting list of p-values for id 12498.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8124848	8179704	NM_003897	IER3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8124848	8178435	NM_003897	IER3	0.951386	1.724756e-54	2.988485e-50	1.494242e-50
3	8124848	7972190	NM_022118	RBM26	-0.643123	1.387361e-13	2.403881e-9	8.012936e-10
4	8124848	8010379	NM_024110	CARD14	0.639516	2.090913e-13	3.622925e-9	9.057312e-10
5	8124848	7966462	NM_024953	NAA25	-0.630741	5.545723e-13	9.609074e-9	1.921815e-9
6	8124848	7954940	NM_016488	PPHLN1	-0.623907	1.160601e-12	2.010973e-8	3.351622e-9
7	8124848	8132070	NM_002047	GARS	-0.623685	1.188460e-12	2.059244e-8	2.941778e-9
8	8124848	8166500	NM_003410	ZFX	-0.618275	2.104722e-12	3.646852e-8	4.558565e-9
9	8124848	7974146	NM_017922	PRPF39	-0.615054	2.942664e-12	5.098754e-8	5.665283e-9
10	8124848	7984641	NM_005744	ARIH1	-0.614920	2.983506e-12	5.169520e-8	5.169520e-9
11	8124848	8015187	NM_030967	KRTAP1-1	0.613594	3.420975e-12	5.927524e-8	5.388658e-9
12	8124848	8070744	NM_004928	C21orf2	0.613097	3.600227e-12	6.238113e-8	5.198428e-9
13	8124848	8132417	NM_003718	CDK13	-0.611949	4.049896e-12	7.017254e-8	5.397888e-9
14	8124848	8150287	NM_023034	WHSC1L1	-0.609017	5.458436e-12	9.457832e-8	6.755594e-9
15	8124848	8087951	NM_018165	PBRM1	-0.607627	6.281481e-12	1.088392e-7	7.255948e-9
16	8124848	8082607	NM_014382	ATP2C1	-0.607505	6.359593e-12	1.101927e-7	6.887042e-9
17	8124848	8050367	NM_015909	NBAS	-0.607323	6.477112e-12	1.122289e-7	6.601701e-9
18	8124848	8023195	NM_005901	SMAD2	-0.606418	7.093554e-12	1.229100e-7	6.828334e-9
19	8124848	8006377	NM_001098507	ZNF207	-0.606403	7.104252e-12	1.230954e-7	6.478704e-9
20	8124848	8054064	NM_025190	ANKRD36B	-0.606174	7.269555e-12	1.259596e-7	6.297979e-9
21	8124848	8021312	NM_015285	WDR7	-0.606065	7.349096e-12	1.273378e-7	6.063704e-9
22	8124848	8041592	NM_019063	EML4	-0.605073	8.116116e-12	1.406279e-7	6.392179e-9
23	8124848	8111360	NM_016107	ZFR	-0.604912	8.248159e-12	1.429159e-7	6.213733e-9
24	8124848	8089000	NM_001008390	CGGBP1	-0.603241	9.740762e-12	1.687782e-7	7.032424e-9
25	8124848	7966301	NM_016238	ANAPC7	-0.602744	1.023263e-11	1.773008e-7	7.092033e-9
26	8124848	8052125	NM_016115	ASB3	-0.602612	1.036701e-11	1.796292e-7	6.908815e-9
27	8124848	7938331	NM_003442	ZNF143	-0.602408	1.057923e-11	1.833064e-7	6.789126e-9
28	8124848	8108134	NM_014829	DDX46	-0.602139	1.086437e-11	1.882470e-7	6.723108e-9
29	8124848	7916045	NM_001981	EPS15	-0.601828	1.120373e-11	1.941270e-7	6.694036e-9
30	8124848	8087210	NM_004157	PRKAR2A	-0.601797	1.123723e-11	1.947074e-7	6.490247e-9
31	8124848	8134180	NM_019004	ANKIB1	-0.601731	1.131157e-11	1.959956e-7	6.322438e-9
32	8124848	7918255	NM_001048210	CLCC1	-0.601534	1.153348e-11	1.998406e-7	6.245019e-9
33	8124848	7907445	NM_014458	KLHL20	-0.599751	1.374373e-11	2.381377e-7	7.216294e-9
34	8124848	7936762	NM_001001976	ATE1	-0.599635	1.390091e-11	2.408610e-7	7.084147e-9
35	8124848	7999841	NM_015092	SMG1	-0.599511	1.407149e-11	2.438168e-7	6.966193e-9
36	8124848	8066668	NM_020967	NCOA5	-0.599215	1.448485e-11	2.509790e-7	6.971639e-9
37	8124848	8051443	NM_003162	STRN	-0.598781	1.511382e-11	2.618771e-7	7.077760e-9
38	8124848	8051820	NM_022065	THADA	-0.598526	1.549528e-11	2.684868e-7	7.065441e-9
39	8124848	8126428	NM_033502	TRERF1	-0.598477	1.556882e-11	2.697610e-7	6.916949e-9
40	8124848	7987325	NM_014691	AQR	-0.598415	1.566337e-11	2.713991e-7	6.784979e-9
41	8124848	7936614	NM_003750	EIF3A	-0.598169	1.604457e-11	2.780043e-7	6.780591e-9
42	8124848	8051928	NM_006036	PREPL	-0.597778	1.666752e-11	2.887982e-7	6.876147e-9
43	8124848	8101043	NM_203505	G3BP2	-0.597708	1.678131e-11	2.907697e-7	6.762086e-9
44	8124848	8043861	NM_015904	EIF5B	-0.597584	1.698471e-11	2.942940e-7	6.688500e-9
45	8124848	8083183	NM_001080415	SR140	-0.597431	1.723900e-11	2.987001e-7	6.637780e-9
46	8124848	8013602	NM_001080837	SEBOX	0.596997	1.798219e-11	3.115773e-7	6.773420e-9
47	8124848	7924733	NM_001618	PARP1	-0.596978	1.801598e-11	3.121629e-7	6.641764e-9
48	8124848	7958130	NM_003299	HSP90B1	-0.596929	1.810163e-11	3.136469e-7	6.534311e-9
49	8124848	8110589	NM_015455	CNOT6	-0.596670	1.856348e-11	3.216494e-7	6.564274e-9
50	8124848	8174893	NM_001081550	THOC2	-0.596503	1.886668e-11	3.269029e-7	6.538058e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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