[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 15187.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15187	8125537	NM_006120	HLA-DMA		major histocompatibility complex, class II, DM alpha

Fetching correlation data, please wait...
Getting list of correlations for id 15187.
Getting list of p-values for id 15187.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.111 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8125537	8178884	NM_006120	HLA-DMA	0.995026	5.312199e-105	9.204448e-101	9.204448e-101
2	8125537	8180086	NM_006120	HLA-DMA	0.995026	5.312199e-105	9.204448e-101	4.602224e-101
3	8125537	8178193	NM_019111	HLA-DRA	0.774025	3.618628e-22	6.269997e-18	2.089999e-18
4	8125537	7997712	NM_002163	IRF8	0.763708	2.705206e-21	4.687311e-17	1.171828e-17
5	8125537	8179481	NM_019111	HLA-DRA	0.751327	2.653349e-20	4.597457e-16	9.194914e-17
6	8125537	8180100	NM_033554	HLA-DPA1	0.749096	3.947110e-20	6.839158e-16	1.139860e-16
7	8125537	8118548	NM_019111	HLA-DRA	0.745973	6.835384e-20	1.184367e-15	1.691953e-16
8	8125537	8178811			0.736049	3.715660e-19	6.438125e-15	8.047656e-16
9	8125537	8179519	NM_002121	HLA-DPB1	0.731625	7.713656e-19	1.336545e-14	1.485050e-15
10	8125537	8180078	NM_002118	HLA-DMB	0.724507	2.425062e-18	4.201905e-14	4.201905e-15
11	8125537	8125556	NM_033554	HLA-DPA1	0.721853	3.683075e-18	6.381664e-14	5.801513e-15
12	8125537	8178891	NM_033554	HLA-DPA1	0.721853	3.683075e-18	6.381664e-14	5.318054e-15
13	8125537	8125530	NM_002118	HLA-DMB	0.721076	4.159103e-18	7.206477e-14	5.543444e-15
14	8125537	8118594	NM_002121	HLA-DPB1	0.716123	8.934325e-18	1.548050e-13	1.105750e-14
15	8125537	8180003			0.714687	1.111944e-17	1.926665e-13	1.284444e-14
16	8125537	8178220	NM_002121	HLA-DPB1	0.688888	4.554911e-16	7.892294e-12	4.932684e-13
17	8125537	8178802			0.687175	5.750011e-16	9.963044e-12	5.860614e-13
18	8125537	8021727	NM_018235	CNDP2	0.669046	6.154926e-15	1.066464e-10	5.924800e-12
19	8125537	8074237	NM_017424	CECR1	0.667957	7.058745e-15	1.223069e-10	6.437204e-12
20	8125537	8166059	NM_016562	TLR7	0.656111	3.025754e-14	5.242724e-10	2.621362e-11
21	8125537	7977786	NM_003982	SLC7A7	0.652537	4.634731e-14	8.030599e-10	3.824095e-11
22	8125537	8064522	NM_174856	IDH3B	0.648652	7.320485e-14	1.268420e-9	5.765547e-11
23	8125537	7948364	NM_001039396	MPEG1	0.647911	7.982074e-14	1.383054e-9	6.013278e-11
24	8125537	8138805	NM_019029	CPVL	0.636927	2.796986e-13	4.846338e-9	2.019308e-10
25	8125537	7993185	NM_002484	NUBP1	0.635050	3.448308e-13	5.974883e-9	2.389953e-10
26	8125537	8166730	NM_000397	CYBB	0.633623	4.039278e-13	6.998857e-9	2.691868e-10
27	8125537	7919971	NM_000449	RFX5	0.632628	4.507937e-13	7.810903e-9	2.892927e-10
28	8125537	8138773	NM_022170	EIF4H	0.622995	1.279145e-12	2.216374e-8	7.915622e-10
29	8125537	8102619	NM_001154	ANXA5	0.617523	2.276793e-12	3.944999e-8	1.360344e-9
30	8125537	8103508	NM_017923	MARCH1	0.616767	2.463482e-12	4.268476e-8	1.422825e-9
31	8125537	8061136	NM_002823	PTMA	0.614165	3.225360e-12	5.588580e-8	1.802768e-9
32	8125537	8180022			0.612729	3.738973e-12	6.478519e-8	2.024537e-9
33	8125537	8178826			0.612729	3.738973e-12	6.478519e-8	1.963187e-9
34	8125537	7914834	NM_002794	PSMB2	0.609124	5.399822e-12	9.356272e-8	2.751845e-9
35	8125537	7955441	NM_014033	METTL7A	0.608290	5.874921e-12	1.017948e-7	2.908422e-9
36	8125537	7955908	NM_005337	NCKAP1L	0.606777	6.842913e-12	1.185672e-7	3.293532e-9
37	8125537	8115147	NM_001025159	CD74	0.606002	7.396180e-12	1.281536e-7	3.463611e-9
38	8125537	8011826	AY358809	C17orf87	0.604205	8.850672e-12	1.533556e-7	4.035674e-9
39	8125537	7905395	NM_002796	PSMB4	0.602600	1.038009e-11	1.798558e-7	4.611687e-9
40	8125537	7947934	NM_014342	MTCH2	0.600528	1.273463e-11	2.206529e-7	5.516323e-9
41	8125537	7898328	NM_001114600	C1orf144	0.600159	1.320534e-11	2.288089e-7	5.580706e-9
42	8125537	8036602	NM_001398	ECH1	0.599607	1.393953e-11	2.415303e-7	5.750721e-9
43	8125537	7940051	NM_015457	ZDHHC5	0.598345	1.577071e-11	2.732591e-7	6.354862e-9
44	8125537	8004521	NR_024603	MPDU1	0.597675	1.683559e-11	2.917103e-7	6.629779e-9
45	8125537	8113039	NM_002397	MEF2C	0.596164	1.949589e-11	3.378053e-7	7.506784e-9
46	8125537	8178199			0.595705	2.038162e-11	3.531523e-7	7.677223e-9
47	8125537	8179489			0.595705	2.038162e-11	3.531523e-7	7.513878e-9
48	8125537	8053214	NM_181575	AUP1	0.595147	2.151030e-11	3.727089e-7	7.764769e-9
49	8125537	8016099	NM_004247	EFTUD2	0.592818	2.690824e-11	4.662391e-7	9.515083e-9
50	8125537	8138824	NM_014766	SCRN1	0.591414	3.076992e-11	5.331503e-7	1.066301e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation