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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
17031 8118548 NM_019111 HLA-DRA link to infopage major histocompatibility complex, class II, DR alpha
17116 8179481 NM_019111 HLA-DRA link to infopage major histocompatibility complex, class II, DR alpha
17146 8178193 NM_019111 HLA-DRA link to infopage major histocompatibility complex, class II, DR alpha

Fetching correlation data, please wait...
Getting list of correlations for id 17031.
Getting list of p-values for id 17031.
1 of 3 done.
Getting list of correlations for id 17116.
Getting list of p-values for id 17116.
2 of 3 done.
Getting list of correlations for id 17146.
Getting list of p-values for id 17146.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.337 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8118548 8179481 NM_019111 HLA-DRA link to infopage 0.997648 1.002130e-121 5.209173e-117 5.209173e-117
2 8179481 8118548 NM_019111 HLA-DRA link to infopage 0.997648 1.002130e-121 5.209173e-117 2.604587e-117
3 8118548 8178193 NM_019111 HLA-DRA link to infopage 0.988953 3.205272e-87 1.666132e-82 5.553775e-83
4 8178193 8118548 NM_019111 HLA-DRA link to infopage 0.988953 3.205272e-87 1.666132e-82 4.165331e-83
5 8178193 8179481 NM_019111 HLA-DRA link to infopage 0.986257 2.293266e-82 1.192063e-77 2.384125e-78
6 8179481 8178193 NM_019111 HLA-DRA link to infopage 0.986257 2.293266e-82 1.192063e-77 1.986771e-78
7 8178193 8180086 NM_006120 HLA-DMA link to infopage 0.787732 2.107065e-23 1.095273e-18 1.564676e-19
8 8178193 8178884 NM_006120 HLA-DMA link to infopage 0.787732 2.107065e-23 1.095273e-18 1.369092e-19
9 8178193 8125537 NM_006120 HLA-DMA link to infopage 0.774025 3.618628e-22 1.880999e-17 2.089999e-18
10 8179481 8178884 NM_006120 HLA-DMA link to infopage 0.764084 2.518803e-21 1.309299e-16 1.309299e-17
11 8179481 8180086 NM_006120 HLA-DMA link to infopage 0.764084 2.518803e-21 1.309299e-16 1.190272e-17
12 8118548 8180086 NM_006120 HLA-DMA link to infopage 0.759062 6.475534e-21 3.366047e-16 2.805039e-17
13 8118548 8178884 NM_006120 HLA-DMA link to infopage 0.759062 6.475534e-21 3.366047e-16 2.589267e-17
14 8178193 8125530 NM_002118 HLA-DMB link to infopage 0.756247 1.088472e-20 5.657987e-16 4.041419e-17
15 8178193 8180078 NM_002118 HLA-DMB link to infopage 0.755315 1.290825e-20 6.709835e-16 4.473223e-17
16 8179481 8125537 NM_006120 HLA-DMA link to infopage 0.751327 2.653349e-20 1.379237e-15 8.620232e-17
17 8118548 8125537 NM_006120 HLA-DMA link to infopage 0.745973 6.835384e-20 3.553101e-15 2.090059e-16
18 8179481 8125530 NM_002118 HLA-DMB link to infopage 0.733584 5.592135e-19 2.906848e-14 1.614915e-15
19 8179481 8180078 NM_002118 HLA-DMB link to infopage 0.732826 6.334945e-19 3.292968e-14 1.733141e-15
20 8118548 8125530 NM_002118 HLA-DMB link to infopage 0.729877 1.025313e-18 5.329681e-14 2.664841e-15
21 8118548 8180078 NM_002118 HLA-DMB link to infopage 0.729380 1.111324e-18 5.776771e-14 2.750843e-15
22 8178193 7919971 NM_000449 RFX5 link to infopage 0.721742 3.747844e-18 1.948167e-13 8.855303e-15
23 8179481 8138805 NM_019029 CPVL link to infopage 0.720273 4.712988e-18 2.449858e-13 1.065156e-14
24 8118548 8138805 NM_019029 CPVL link to infopage 0.719279 5.498663e-18 2.858260e-13 1.190942e-14
25 8179481 7955441 NM_014033 METTL7A link to infopage 0.709906 2.280762e-17 1.185563e-12 4.742252e-14
26 8179481 7919971 NM_000449 RFX5 link to infopage 0.705294 4.500212e-17 2.339255e-12 8.997136e-14
27 8178193 8103508 NM_017923 MARCH1 link to infopage 0.703356 5.964143e-17 3.100221e-12 1.148230e-13
28 8178193 8138805 NM_019029 CPVL link to infopage 0.703183 6.115304e-17 3.178796e-12 1.135284e-13
29 8118548 7955441 NM_014033 METTL7A link to infopage 0.701439 7.862039e-17 4.086767e-12 1.409230e-13
30 8118548 7919971 NM_000449 RFX5 link to infopage 0.700616 8.847173e-17 4.598849e-12 1.532950e-13
31 8178193 7955441 NM_014033 METTL7A link to infopage 0.699199 1.082939e-16 5.629224e-12 1.815879e-13
32 8179481 8103508 NM_017923 MARCH1 link to infopage 0.695329 1.870091e-16 9.720921e-12 3.037788e-13
33 8179481 8079392 NM_001123396 CCR2 link to infopage 0.691604 3.138116e-16 1.631224e-11 4.943103e-13
34 8118548 8103508 NM_017923 MARCH1 link to infopage 0.691355 3.247778e-16 1.688228e-11 4.965375e-13
35 8118548 8079392 NM_001123396 CCR2 link to infopage 0.684132 8.663269e-16 4.503254e-11 1.286644e-12
36 8118548 7920317 NM_004515 ILF2 link to infopage 0.683317 9.660072e-16 5.021402e-11 1.394834e-12
37 8178193 8180100 NM_033554 HLA-DPA1 link to infopage 0.682498 1.077377e-15 5.600315e-11 1.513599e-12
38 8179481 7920317 NM_004515 ILF2 link to infopage 0.682478 1.080162e-15 5.614790e-11 1.477576e-12
39 8178193 7920317 NM_004515 ILF2 link to infopage 0.680193 1.461841e-15 7.598793e-11 1.948409e-12
40 8179481 8043100 NM_021103 TMSB10 link to infopage 0.676621 2.332842e-15 1.212635e-10 3.031587e-12
41 8179481 8180100 NM_033554 HLA-DPA1 link to infopage 0.674541 3.053520e-15 1.587250e-10 3.871342e-12
42 8179481 8093294 NM_001123041 CCR2 link to infopage 0.674198 3.191655e-15 1.659054e-10 3.950129e-12
43 8118548 8084092 NM_002492 NDUFB5 link to infopage 0.672972 3.735916e-15 1.941967e-10 4.516201e-12
44 8179481 8067978 NM_021130 PPIA link to infopage 0.672661 3.887809e-15 2.020922e-10 4.593005e-12
45 8118548 8180100 NM_033554 HLA-DPA1 link to infopage 0.671843 4.316089e-15 2.243546e-10 4.985658e-12
46 8118548 8067978 NM_021130 PPIA link to infopage 0.671493 4.512738e-15 2.345766e-10 5.099492e-12
47 8179481 8084092 NM_002492 NDUFB5 link to infopage 0.668335 6.731256e-15 3.498974e-10 7.444626e-12
48 8118548 8043100 NM_021103 TMSB10 link to infopage 0.668181 6.863326e-15 3.567626e-10 7.432553e-12
49 8178193 8079392 NM_001123396 CCR2 link to infopage 0.666379 8.602276e-15 4.471549e-10 9.125610e-12
50 8118548 8093294 NM_001123041 CCR2 link to infopage 0.665944 9.081945e-15 4.720886e-10 9.441771e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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