[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 15495.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15495	8118564	NM_020056	HLA-DQA2		major histocompatibility complex, class II, DQ alpha 2

Fetching correlation data, please wait...
Getting list of correlations for id 15495.
Getting list of p-values for id 15495.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.069 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118564	8178205	NM_020056	HLA-DQA2	0.995066	3.509530e-105	6.080963e-101	6.080963e-101
2	8118564	8178199			0.746417	6.324718e-20	1.095884e-15	5.479420e-16
3	8118564	8179489			0.746417	6.324718e-20	1.095884e-15	3.652946e-16
4	8118564	8118556	NM_002122	HLA-DQA1	0.636760	2.850012e-13	4.938215e-9	1.234554e-9
5	8118564	8178884	NM_006120	HLA-DMA	0.550317	1.191628e-9	2.064733e-5	4.129466e-6
6	8118564	8180086	NM_006120	HLA-DMA	0.550317	1.191628e-9	2.064733e-5	3.441222e-6
7	8118564	8125537	NM_006120	HLA-DMA	0.533440	4.656978e-9	8.069145e-5	1.152735e-5
8	8118564	8180100	NM_033554	HLA-DPA1	0.531293	5.509410e-9	9.546155e-5	1.193269e-5
9	8118564	8178891	NM_033554	HLA-DPA1	0.529170	6.498111e-9	1.125928e-4	1.251031e-5
10	8118564	8125556	NM_033554	HLA-DPA1	0.529170	6.498111e-9	1.125928e-4	1.125928e-5
11	8118564	8125530	NM_002118	HLA-DMB	0.524893	9.030422e-9	1.564701e-4	1.422456e-5
12	8118564	8180078	NM_002118	HLA-DMB	0.515605	1.816922e-8	3.148181e-4	2.623484e-5
13	8118564	8115147	NM_001025159	CD74	0.490446	1.090798e-7	1.890026e-3	1.453866e-4
14	8118564	8180022			0.490327	1.099679e-7	1.905413e-3	1.361009e-4
15	8118564	8178826			0.490327	1.099679e-7	1.905413e-3	1.270275e-4
16	8118564	8178811			0.488169	1.273980e-7	2.207426e-3	1.379641e-4
17	8118564	8178802			0.482667	1.845182e-7	3.197148e-3	1.880675e-4
18	8118564	8112428	NM_005582	CD180	0.477606	2.579475e-7	4.469456e-3	2.483031e-4
19	8118564	8180003			0.477294	2.632940e-7	4.562096e-3	2.401103e-4
20	8118564	8113039	NM_002397	MEF2C	0.471145	3.925947e-7	6.802489e-3	3.401244e-4
21	8118564	7903980	BC017973	C1orf162	0.467419	4.982477e-7	8.633138e-3	4.111018e-4
22	8118564	8180029	NR_003937	HLA-DQB2	0.466525	5.273441e-7	9.137292e-3	4.153314e-4
23	8118564	8178193	NM_019111	HLA-DRA	0.465948	5.469576e-7	9.477134e-3	4.120493e-4
24	8118564	8011826	AY358809	C17orf87	0.457839	9.078159e-7	1.572973e-2	6.554052e-4
25	8118564	8179481	NM_019111	HLA-DRA	0.454881	1.088586e-6	1.886192e-2	7.544769e-4
26	8118564	7932023	NM_014688	USP6NL	0.452990	1.221431e-6	2.116374e-2	8.139901e-4
27	8118564	8118548	NM_019111	HLA-DRA	0.447908	1.658992e-6	2.874535e-2	1.064642e-3
28	8118564	8125463	NR_003937	HLA-DQB2	0.447804	1.669363e-6	2.892505e-2	1.033038e-3
29	8118564	8031483	NM_001136134	RPL28	0.434518	3.631837e-6	6.292885e-2	2.169960e-3
30	8118564	8070701	NM_000100	CSTB	0.429331	4.876299e-6	8.449163e-2	2.816388e-3
31	8118564	7901135	NM_016486	TMEM69	0.425933	5.899216e-6	1.022157e-1	3.297281e-3
32	8118564	8042801	NM_080916	DGUOK	0.425028	6.203894e-6	1.074949e-1	3.359215e-3
33	8118564	7933760	NM_005436	CCDC6	0.421413	7.575433e-6	1.312595e-1	3.977561e-3
34	8118564	8145293	NM_014265	ADAM28	0.419842	8.256495e-6	1.430603e-1	4.207656e-3
35	8118564	8102619	NM_001154	ANXA5	0.419696	8.322870e-6	1.442104e-1	4.120296e-3
36	8118564	8081431	NM_001627	ALCAM	0.418239	9.010806e-6	1.561302e-1	4.336951e-3
37	8118564	7997712	NM_002163	IRF8	0.417862	9.197153e-6	1.593591e-1	4.307002e-3
38	8118564	8166059	NM_016562	TLR7	0.417239	9.513607e-6	1.648423e-1	4.337955e-3
39	8118564	7906786	NM_032738	FCRLA	0.403388	1.983104e-5	3.436124e-1	8.810574e-3
40	8118564	7973314	NM_005015	OXA1L	0.400741	2.273607e-5	3.939479e-1	9.848697e-3
41	8118564	7946988	NM_181507	HPS5	0.399444	2.430138e-5	4.210700e-1	1.027000e-2
42	8118564	8125545	NM_002119	HLA-DOA	0.397206	2.724182e-5	4.720191e-1	1.123855e-2
43	8118564	8144378	NM_018361	AGPAT5	0.392645	3.429323e-5	5.941989e-1	1.381858e-2
44	8118564	8043476	ENST00000390273		0.392488	3.456435e-5	5.988966e-1	1.361129e-2
45	8118564	7905365	NM_001135638	PIP5K1A	0.391493	3.632719e-5	6.294412e-1	1.398758e-2
46	8118564	8000375	NM_001006634	ARHGAP17	0.390542	3.808977e-5	6.599814e-1	1.434742e-2
47	8118564	8174509	NM_005274	GNG5	0.389871	3.938209e-5	6.823735e-1	1.451859e-2
48	8118564	8157463	NM_153045	C9orf91	0.389105	4.090835e-5	7.088190e-1	1.476706e-2
49	8118564	7966356	NM_001040107	HVCN1	0.386980	4.543335e-5	7.872236e-1	1.606579e-2
50	8118564	7948775	NM_024099	C11orf48	0.386817	4.579811e-5	7.935438e-1	1.587088e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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