[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 2642.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2642	8161520	NR_002836	PGM5P2		phosphoglucomutase 5 pseudogene 2

Fetching correlation data, please wait...
Getting list of correlations for id 2642.
Getting list of p-values for id 2642.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.076 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8161520	8161513	NR_002836	PGM5P2	0.981802	3.912003e-76	6.778327e-72	6.778327e-72
2	8161520	8155665	NM_021965	PGM5	0.666176	8.822854e-15	1.528736e-10	7.643680e-11
3	8161520	8044640	NM_021965	PGM5	0.588018	4.244950e-11	7.355225e-7	2.451742e-7
4	8161520	7909689	NM_020197	SMYD2	-0.410775	1.345826e-5	2.331912e-1	5.829781e-2
5	8161520	8119503	NM_138572	TAF8	-0.391800	3.577365e-5	6.198501e-1	1.239700e-1
6	8161520	8161610	BC029780	C9orf71	0.391666	3.601560e-5	6.240424e-1	1.040071e-1
7	8161520	8082229	NM_000373	UMPS	-0.390491	3.818750e-5	6.616748e-1	9.452497e-2
8	8161520	8134789	NM_013440	PILRB	-0.389552	4.001105e-5	6.932714e-1	8.665892e-2
9	8161520	8063156	NM_001250	CD40	-0.380013	6.376173e-5	1.104799e+0	1.227555e-1
10	8161520	8035581	NM_001017392	SUGP2	-0.378050	7.005629e-5	1.213865e+0	1.213865e-1
11	8161520	8053484	NM_003896	ST3GAL5	-0.377271	7.270850e-5	1.259820e+0	1.145291e-1
12	8161520	8053158	NM_006302	MOGS	-0.376335	7.602320e-5	1.317254e+0	1.097712e-1
13	8161520	7998174	NM_018032	LUC7L	-0.369093	1.068266e-4	1.850984e+0	1.423834e-1
14	8161520	7978335	NM_020195	SDR39U1	-0.365016	1.289254e-4	2.233891e+0	1.595636e-1
15	8161520	8119492	NM_004053	BYSL	-0.357138	1.841012e-4	3.189922e+0	2.126614e-1
16	8161520	8104506	NM_007118	TRIO	-0.355903	1.945103e-4	3.370280e+0	2.106425e-1
17	8161520	7945734	AB029488	C11orf21	-0.355148	2.011405e-4	3.485161e+0	2.050095e-1
18	8161520	8065668	NM_016408	CDK5RAP1	-0.351573	2.354843e-4	4.080237e+0	2.266798e-1
19	8161520	8176572	ENST00000455344		0.349019	2.632418e-4	4.561190e+0	2.400626e-1
20	8161520	8157727	NM_005294	GPR21	-0.348797	2.658022e-4	4.605554e+0	2.302777e-1
21	8161520	7943919	NM_017868	TTC12	-0.348349	2.710128e-4	4.695838e+0	2.236113e-1
22	8161520	8146142	NM_178819	AGPAT6	-0.347531	2.807842e-4	4.865148e+0	2.211431e-1
23	8161520	7967230	NM_019887	DIABLO	-0.347393	2.824714e-4	4.894382e+0	2.127992e-1
24	8161520	8000263	NM_153603	COG7	-0.347349	2.830063e-4	4.903650e+0	2.043187e-1
25	8161520	8126646	NM_018135	MRPS18A	-0.345998	2.999769e-4	5.197699e+0	2.079080e-1
26	8161520	8068810	NM_018964	SLC37A1	-0.345572	3.055237e-4	5.293810e+0	2.036081e-1
27	8161520	7955450	NM_015416	LETMD1	-0.345095	3.118465e-4	5.403365e+0	2.001246e-1
28	8161520	8030199	NM_003089	SNRNP70	-0.341828	3.584886e-4	6.211531e+0	2.218404e-1
29	8161520	8174086	NM_019007	ARMCX6	-0.340801	3.744258e-4	6.487675e+0	2.237129e-1
30	8161520	7935810	NM_005004	NDUFB8	-0.338049	4.203973e-4	7.284224e+0	2.428075e-1
31	8161520	8026610	NM_015260	SIN3B	-0.336908	4.409514e-4	7.640366e+0	2.464634e-1
32	8161520	8059222	NM_012100	DNPEP	-0.336540	4.477764e-4	7.758622e+0	2.424569e-1
33	8161520	7905589	ENST00000368694		-0.336128	4.555234e-4	7.892853e+0	2.391774e-1
34	8161520	7990429	NM_020447	C15orf17	-0.335205	4.733262e-4	8.201323e+0	2.412154e-1
35	8161520	8104912	NM_005983	SKP2	-0.333324	5.116477e-4	8.865319e+0	2.532948e-1
36	8161520	8024282	NM_170711	DAZAP1	-0.332793	5.229593e-4	9.061316e+0	2.517032e-1
37	8161520	7944435	NM_015517	HINFP	-0.332564	5.279084e-4	9.147070e+0	2.472181e-1
38	8161520	7996685	NM_014329	EDC4	-0.332477	5.298076e-4	9.179976e+0	2.415783e-1
39	8161520	7983132	AK122666	STARD9	-0.331652	5.480478e-4	9.496025e+0	2.434878e-1
40	8161520	8090351	NM_025112	ZXDC	-0.330833	5.667518e-4	9.820108e+0	2.455027e-1
41	8161520	7985221	ENST00000414905		-0.329560	5.969537e-4	1.034342e+1	2.522785e-1
42	8161520	8020029	NM_001025300	RAB12	-0.329510	5.981893e-4	1.036483e+1	2.467816e-1
43	8161520	8055183	NM_017751	SMPD4	-0.328629	6.199804e-4	1.074240e+1	2.498233e-1
44	8161520	8061919	NM_005093	CBFA2T2	-0.326581	6.735392e-4	1.167041e+1	2.652367e-1
45	8161520	8116548	NM_020185	DUSP22	-0.326099	6.867424e-4	1.189918e+1	2.644263e-1
46	8161520	8013860	NM_078471	MYO18A	-0.325912	6.919202e-4	1.198890e+1	2.606283e-1
47	8161520	8093456	NM_052861	C4orf42	-0.325862	6.933174e-4	1.201311e+1	2.555981e-1
48	8161520	8044649	NR_024077	WASH2P	-0.325612	7.003307e-4	1.213463e+1	2.528048e-1
49	8161520	8004133	NR_027680	RPAIN	-0.325467	7.044060e-4	1.220524e+1	2.490866e-1
50	8161520	7963698	NM_001130059	ATF7	-0.323336	7.671156e-4	1.329181e+1	2.658362e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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