[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3360	8000263	NM_153603	COG7		component of oligomeric golgi complex 7

Fetching correlation data, please wait...
Getting list of correlations for id 3360.
Getting list of p-values for id 3360.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8000263	8060063	NM_004544	NDUFA10	0.718532	6.172028e-18	1.069427e-13	1.069427e-13
2	8000263	7935951	NM_024541	C10orf76	0.694937	1.975398e-16	3.422772e-12	1.711386e-12
3	8000263	7908732	NM_018085	IPO9	0.683195	9.817780e-16	1.701127e-11	5.670422e-12
4	8000263	8016099	NM_004247	EFTUD2	0.673140	3.656524e-15	6.335659e-11	1.583915e-11
5	8000263	7914617	NM_013411	AK2	0.672193	4.127193e-15	7.151187e-11	1.430237e-11
6	8000263	7912412	NM_004958	MTOR	0.668903	6.266598e-15	1.085813e-10	1.809689e-11
7	8000263	8126588	NM_020750	XPO5	0.663474	1.234054e-14	2.138246e-10	3.054637e-11
8	8000263	8049729	NM_198998	AQP12A	-0.663107	1.291204e-14	2.237269e-10	2.796586e-11
9	8000263	7914563	NM_003680	YARS	0.661710	1.533257e-14	2.656675e-10	2.951861e-11
10	8000263	8094501	NM_020860	STIM2	0.661570	1.559810e-14	2.702682e-10	2.702682e-11
11	8000263	8112890	NM_004269	MED27	0.655364	3.309411e-14	5.734217e-10	5.212924e-11
12	8000263	8139433	NM_033054	MYO1G	0.652190	4.828952e-14	8.367126e-10	6.972605e-11
13	8000263	8007904	NM_004287	GOSR2	0.649329	6.763283e-14	1.171874e-9	9.014415e-11
14	8000263	8087271	NM_017730	QRICH1	0.649312	6.777176e-14	1.174281e-9	8.387724e-11
15	8000263	8010924	NM_001128159	VPS53	0.648626	7.343092e-14	1.272338e-9	8.482250e-11
16	8000263	8035905	NM_032139	ANKRD27	0.648533	7.423205e-14	1.286219e-9	8.038867e-11
17	8000263	8035254	NM_031941	USHBP1	-0.646357	9.560855e-14	1.656609e-9	9.744761e-11
18	8000263	7920077	NM_001004432	LINGO4	-0.644883	1.133599e-13	1.964186e-9	1.091215e-10
19	8000263	7919971	NM_000449	RFX5	0.643870	1.273519e-13	2.206627e-9	1.161383e-10
20	8000263	8060126	NM_198998	AQP12A	-0.643751	1.291113e-13	2.237112e-9	1.118556e-10
21	8000263	8145977	NM_021623	PLEKHA2	0.643266	1.364827e-13	2.364836e-9	1.126112e-10
22	8000263	7898328	NM_001114600	C1orf144	0.643164	1.380883e-13	2.392656e-9	1.087571e-10
23	8000263	8145636	NM_024567	HMBOX1	0.642428	1.502060e-13	2.602620e-9	1.131574e-10
24	8000263	8022531	NM_000271	NPC1	0.641491	1.671409e-13	2.896050e-9	1.206687e-10
25	8000263	7967473	NM_001414	EIF2B1	0.640624	1.844443e-13	3.195866e-9	1.278347e-10
26	8000263	7899528	NM_000911	OPRD1	-0.640156	1.944921e-13	3.369964e-9	1.296140e-10
27	8000263	8119858	NM_006502	POLH	0.639489	2.097154e-13	3.633738e-9	1.345829e-10
28	8000263	8066303	NM_032221	CHD6	0.639232	2.158969e-13	3.740846e-9	1.336017e-10
29	8000263	8079662	NM_006321	ARIH2	0.638659	2.302873e-13	3.990188e-9	1.375927e-10
30	8000263	8082408	NM_013336	SEC61A1	0.638634	2.309387e-13	4.001475e-9	1.333825e-10
31	8000263	7990830	NM_015154	MESDC2	0.638103	2.451488e-13	4.247694e-9	1.370224e-10
32	8000263	8025697	NM_012218	ILF3	0.638070	2.460635e-13	4.263542e-9	1.332357e-10
33	8000263	7948379	NM_002556	OSBP	0.637981	2.485386e-13	4.306428e-9	1.304978e-10
34	8000263	7903619	NM_006513	SARS	0.636702	2.868363e-13	4.970012e-9	1.461768e-10
35	8000263	7921571	NM_002857	PEX19	0.636320	2.993559e-13	5.186939e-9	1.481983e-10
36	8000263	8077804	NM_014760	TATDN2	0.635889	3.140794e-13	5.442053e-9	1.511681e-10
37	8000263	8078544	NM_000249	MLH1	0.634689	3.589378e-13	6.219315e-9	1.680896e-10
38	8000263	8115234	NM_001155	ANXA6	0.634436	3.691370e-13	6.396037e-9	1.683168e-10
39	8000263	7899688	NM_012316	KPNA6	0.634213	3.784012e-13	6.556558e-9	1.681169e-10
40	8000263	8136849	NM_001143679	GSTK1	0.633871	3.930041e-13	6.809581e-9	1.702395e-10
41	8000263	8060539	NM_002836	PTPRA	0.632470	4.586918e-13	7.947752e-9	1.938476e-10
42	8000263	8172876	NM_006306	SMC1A	0.632034	4.812301e-13	8.338275e-9	1.985303e-10
43	8000263	7965812	NM_024312	GNPTAB	0.631170	5.291007e-13	9.167728e-9	2.132030e-10
44	8000263	8006999	NM_172220	CSF3	-0.631106	5.328338e-13	9.232411e-9	2.098275e-10
45	8000263	8018600	NM_014230	SRP68	0.630556	5.658918e-13	9.805208e-9	2.178935e-10
46	8000263	7901611	ENST00000361350		-0.630442	5.729935e-13	9.928258e-9	2.158317e-10
47	8000263	8085665	NM_015150	RFTN1	0.630439	5.731913e-13	9.931685e-9	2.113124e-10
48	8000263	8164644	NM_033387	FAM78A	0.629060	6.661589e-13	1.154254e-8	2.404695e-10
49	8000263	7900235	NM_012090	MACF1	0.628991	6.711277e-13	1.162863e-8	2.373190e-10
50	8000263	8123062	NM_020823	TMEM181	0.628333	7.208699e-13	1.249051e-8	2.498103e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation