[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5372	8082229	NM_000373	UMPS		uridine monophosphate synthetase

Fetching correlation data, please wait...
Getting list of correlations for id 5372.
Getting list of p-values for id 5372.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8082229	8136631	NM_003143	SSBP1	0.741579	1.460305e-19	2.530271e-15	2.530271e-15
2	8082229	7970546	NM_152726	EFHA1	0.735404	4.136805e-19	7.167842e-15	3.583921e-15
3	8082229	8089584	NM_015412	C3orf17	0.734792	4.579502e-19	7.934903e-15	2.644968e-15
4	8082229	8020058	NM_021074	NDUFV2	0.730191	9.744387e-19	1.688410e-14	4.221025e-15
5	8082229	7957746	NM_213611	SLC25A3	0.729281	1.129285e-18	1.956713e-14	3.913425e-15
6	8082229	7927936	NM_004728	DDX21	0.728486	1.283903e-18	2.224619e-14	3.707698e-15
7	8082229	8039068	NM_021074	NDUFV2	0.728158	1.353641e-18	2.345453e-14	3.350647e-15
8	8082229	8041888	NM_000179	MSH6	0.727856	1.421117e-18	2.462370e-14	3.077963e-15
9	8082229	8163795	NM_005047	PSMD5	0.727582	1.485031e-18	2.573113e-14	2.859014e-15
10	8082229	8092564	NM_004593	TRA2B	0.725393	2.106776e-18	3.650410e-14	3.650410e-15
11	8082229	8144894	NM_018142	INTS10	0.724155	2.564011e-18	4.442662e-14	4.038784e-15
12	8082229	7971820	NM_016075	VPS36	0.724080	2.594396e-18	4.495310e-14	3.746092e-15
13	8082229	7950644	NM_004549	NDUFC2	0.722711	3.219438e-18	5.578320e-14	4.291015e-15
14	8082229	7902382	NM_004582	RABGGTB	0.720372	4.641259e-18	8.041909e-14	5.744221e-15
15	8082229	7913712	NM_006625	SRSF10	0.720129	4.819525e-18	8.350792e-14	5.567195e-15
16	8082229	8088151	NM_022899	ACTR8	0.719087	5.665267e-18	9.816209e-14	6.135130e-15
17	8082229	8173629	NM_004299	ABCB7	0.718690	6.023233e-18	1.043646e-13	6.139092e-15
18	8082229	8155770	NM_015110	SMC5	0.716769	8.094159e-18	1.402475e-13	7.791527e-15
19	8082229	7996185	NM_002428	MMP15	-0.715725	9.494257e-18	1.645070e-13	8.658263e-15
20	8082229	8122409	NM_003630	PEX3	0.715696	9.535838e-18	1.652275e-13	8.261373e-15
21	8082229	7987361	NM_014106	ZNF770	0.715645	9.611299e-18	1.665350e-13	7.930237e-15
22	8082229	7918345	NM_002790	PSMA5	0.714861	1.082881e-17	1.876307e-13	8.528670e-15
23	8082229	7980523	NM_015859	GTF2A1	0.714352	1.169887e-17	2.027064e-13	8.813321e-15
24	8082229	7930422	NM_005445	SMC3	0.714220	1.193488e-17	2.067957e-13	8.616487e-15
25	8082229	7974603	NM_002788	PSMA3	0.712646	1.513726e-17	2.622833e-13	1.049133e-14
26	8082229	8039947	NM_006625	SRSF10	0.712522	1.542235e-17	2.672231e-13	1.027781e-14
27	8082229	8093130	NM_152617	RNF168	0.712512	1.544601e-17	2.676331e-13	9.912335e-15
28	8082229	8049729	NM_198998	AQP12A	-0.712426	1.564705e-17	2.711164e-13	9.682729e-15
29	8082229	7943580	NM_003478	CUL5	0.712244	1.608035e-17	2.786243e-13	9.607733e-15
30	8082229	8018600	NM_014230	SRP68	0.710963	1.948260e-17	3.375750e-13	1.125250e-14
31	8082229	7959282	NM_194271	RNF34	0.710050	2.232461e-17	3.868185e-13	1.247801e-14
32	8082229	8150928	NM_003580	NSMAF	0.709525	2.413866e-17	4.182505e-13	1.307033e-14
33	8082229	8135235	NM_004279	PMPCB	0.708960	2.624917e-17	4.548194e-13	1.378241e-14
34	8082229	7935730	NM_018294	CWF19L1	0.708858	2.664970e-17	4.617593e-13	1.358116e-14
35	8082229	8050658	NM_017552	ATAD2B	0.708695	2.729715e-17	4.729778e-13	1.351365e-14
36	8082229	8063283	NM_001316	CSE1L	0.708516	2.803224e-17	4.857146e-13	1.349207e-14
37	8082229	7909815	NM_018060	IARS2	0.707976	3.036086e-17	5.260626e-13	1.421791e-14
38	8082229	7969935	NM_000123	ERCC5	0.707865	3.086189e-17	5.347439e-13	1.407221e-14
39	8082229	7980463	NM_012245	SNW1	0.707468	3.271779e-17	5.669011e-13	1.453593e-14
40	8082229	7968931	NM_031431	COG3	0.707221	3.393133e-17	5.879282e-13	1.469820e-14
41	8082229	8057554	NM_014412	CACYBP	0.706734	3.644677e-17	6.315132e-13	1.540276e-14
42	8082229	8132943	NM_001762	CCT6A	0.706680	3.674056e-17	6.366036e-13	1.515723e-14
43	8082229	8027416	NM_003796	C19orf2	0.706526	3.757625e-17	6.510836e-13	1.514148e-14
44	8082229	8119080	NM_003017	SRSF3	0.706452	3.798992e-17	6.582513e-13	1.496026e-14
45	8082229	8052562	NM_006430	CCT4	0.705513	4.358320e-17	7.551662e-13	1.678147e-14
46	8082229	8109368	NM_005754	G3BP1	0.705456	4.394852e-17	7.614961e-13	1.655426e-14
47	8082229	8060126	NM_198998	AQP12A	-0.704964	4.721548e-17	8.181026e-13	1.740644e-14
48	8082229	8090840	NM_001005861	RYK	0.704860	4.793999e-17	8.306563e-13	1.730534e-14
49	8082229	8020930	NM_018255	ELP2	0.704590	4.986141e-17	8.639487e-13	1.763161e-14
50	8082229	7973902	NM_003136	SRP54	0.704434	5.100218e-17	8.837148e-13	1.767430e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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