[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6085	8023855	NM_148923	CYB5A		cytochrome b5 type A (microsomal)

Fetching correlation data, please wait...
Getting list of correlations for id 6085.
Getting list of p-values for id 6085.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.099 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8023855	7981953	NR_003318	SNORD116-3	0.524629	9.214445e-9	1.596587e-4	1.596587e-4
2	8023855	7981966	NR_003318	SNORD116-3	0.524629	9.214445e-9	1.596587e-4	7.982935e-5
3	8023855	7981962	NR_003320	SNORD116-5	0.504074	4.206323e-8	7.288295e-4	2.429432e-4
4	8023855	7981958	NR_003320	SNORD116-5	0.504074	4.206323e-8	7.288295e-4	1.822074e-4
5	8023855	7968789	NM_014059	C13orf15	0.503359	4.426687e-8	7.670120e-4	1.534024e-4
6	8023855	7981964	NR_003323	SNORD116-8	0.493562	8.804342e-8	1.525528e-3	2.542547e-4
7	8023855	7953564	NM_138425	C12orf57	0.492965	9.175055e-8	1.589762e-3	2.271088e-4
8	8023855	8095221	NM_001079525	PAICS	0.484200	1.665280e-7	2.885430e-3	3.606788e-4
9	8023855	8117368	NM_003542	HIST1H4C	0.480868	2.079736e-7	3.603559e-3	4.003954e-4
10	8023855	7943288	NM_032102	SRSF8	0.478477	2.435999e-7	4.220855e-3	4.220855e-4
11	8023855	7996012	NM_012106	ARL2BP	0.477986	2.515865e-7	4.359239e-3	3.962945e-4
12	8023855	7981988	NR_003334	SNORD116-20	0.475799	2.903584e-7	5.031039e-3	4.192533e-4
13	8023855	8039961	NR_024080	ACP1	0.472893	3.507165e-7	6.076865e-3	4.674512e-4
14	8023855	7981986	NR_003332	SNORD116-17	0.468414	4.676315e-7	8.102651e-3	5.787608e-4
15	8023855	7981982	NR_003332	SNORD116-17	0.468414	4.676315e-7	8.102651e-3	5.401768e-4
16	8023855	8114843	ENST00000364553		0.466818	5.176169e-7	8.968748e-3	5.605467e-4
17	8023855	8034512	NR_002751	SNORD41	0.465786	5.526074e-7	9.575029e-3	5.632370e-4
18	8023855	7979033	NM_021818	SAV1	0.465719	5.549358e-7	9.615372e-3	5.341873e-4
19	8023855	8133070	ENST00000384614		0.465373	5.672128e-7	9.828096e-3	5.172682e-4
20	8023855	7983306	NM_024908	WDR76	0.464785	5.886426e-7	1.019941e-2	5.099706e-4
21	8023855	7914184	NM_000952	PTAFR	-0.463307	6.460097e-7	1.119341e-2	5.330195e-4
22	8023855	7967021	BC052611	PXN	-0.458371	8.784784e-7	1.522140e-2	6.918816e-4
23	8023855	8030368	NM_001015	RPS11	0.454800	1.093943e-6	1.895475e-2	8.241197e-4
24	8023855	7970317	NR_026580	TFDP1	0.453208	1.205400e-6	2.088596e-2	8.702484e-4
25	8023855	8076461	ENST00000365188		0.451073	1.371778e-6	2.376880e-2	9.507521e-4
26	8023855	7915870	NM_022745	ATPAF1	0.448626	1.589226e-6	2.753652e-2	1.059097e-3
27	8023855	8102869			-0.447841	1.665709e-6	2.886174e-2	1.068953e-3
28	8023855	8121704	NM_138459	NUS1	0.447367	1.713510e-6	2.968998e-2	1.060357e-3
29	8023855	7981978	NR_003330	SNORD116-15	0.446785	1.773969e-6	3.073756e-2	1.059916e-3
30	8023855	8102321	NM_030821	PLA2G12A	0.446662	1.787007e-6	3.096347e-2	1.032116e-3
31	8023855	7902398	NR_002749	SNORD45A	0.443883	2.106970e-6	3.650746e-2	1.177660e-3
32	8023855	8082816	NM_021203	SRPRB	0.443158	2.198987e-6	3.810184e-2	1.190683e-3
33	8023855	7899480	NR_002907	SNORA73A	0.441500	2.423830e-6	4.199771e-2	1.272658e-3
34	8023855	7920047	NM_031420	MRPL9	0.440986	2.497785e-6	4.327912e-2	1.272915e-3
35	8023855	8030339	NM_001459	FLT3LG	0.439375	2.743939e-6	4.754424e-2	1.358407e-3
36	8023855	7960131	ENST00000425052		0.439081	2.791155e-6	4.836234e-2	1.343398e-3
37	8023855	8111457	NM_002853	RAD1	0.438699	2.853862e-6	4.944886e-2	1.336456e-3
38	8023855	8116859	NM_016462	TMEM14C	0.438261	2.927255e-6	5.072055e-2	1.334751e-3
39	8023855	7909890	NM_021958	HLX	-0.436748	3.194917e-6	5.535833e-2	1.419444e-3
40	8023855	8132406	NM_005402	RALA	0.435780	3.378105e-6	5.853243e-2	1.463311e-3
41	8023855	8043276	NR_004378	SNORD94	0.433951	3.751612e-6	6.500418e-2	1.585468e-3
42	8023855	8026272	NM_004843	IL27RA	0.433745	3.795959e-6	6.577259e-2	1.566014e-3
43	8023855	7908777	ENST00000412093		0.433560	3.836358e-6	6.647257e-2	1.545874e-3
44	8023855	8116559	NM_002460	IRF4	0.433539	3.840957e-6	6.655226e-2	1.512551e-3
45	8023855	8089830	NM_001099678	LRRC58	0.433344	3.883868e-6	6.729579e-2	1.495462e-3
46	8023855	8127987	NR_002743	SNORD50A	0.430621	4.533889e-6	7.855869e-2	1.707798e-3
47	8023855	8117653			0.430581	4.544101e-6	7.873564e-2	1.675226e-3
48	8023855	7901601	NM_016491	MRPL37	0.429989	4.698761e-6	8.141544e-2	1.696155e-3
49	8023855	8081277	NM_020202	NIT2	0.429208	4.910207e-6	8.507916e-2	1.736309e-3
50	8023855	8129095	ENST00000435100		0.428290	5.170252e-6	8.958496e-2	1.791699e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation