[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4275	7979033	NM_021818	SAV1		salvador homolog 1 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 4275.
Getting list of p-values for id 4275.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7979033	8041149	NM_015131	WDR43	0.700505	8.988206e-17	1.557386e-12	1.557386e-12
2	7979033	7929116	NM_006413	RPP30	0.695921	1.721049e-16	2.982062e-12	1.491031e-12
3	7979033	8054395	NM_025076	UXS1	0.689808	4.016907e-16	6.960095e-12	2.320032e-12
4	7979033	8128698	NM_014454	SESN1	0.681074	1.301320e-15	2.254797e-11	5.636993e-12
5	7979033	8076463	BC014647	RRP7B	0.678172	1.905898e-15	3.302350e-11	6.604700e-12
6	7979033	8151066	NM_018120	ARMC1	0.676699	2.309375e-15	4.001455e-11	6.669091e-12
7	7979033	8041888	NM_000179	MSH6	0.675610	2.659942e-15	4.608881e-11	6.584115e-12
8	7979033	8013533	ENST00000302153		-0.674698	2.992551e-15	5.185193e-11	6.481491e-12
9	7979033	8162850	NM_017746	TEX10	0.674355	3.127777e-15	5.419498e-11	6.021665e-12
10	7979033	8043251	NM_017952	PTCD3	0.672440	3.999039e-15	6.929134e-11	6.929134e-12
11	7979033	8078600	NM_006756	TCEA1	0.671630	4.434544e-15	7.683735e-11	6.985213e-12
12	7979033	7950644	NM_004549	NDUFC2	0.670652	5.022406e-15	8.702323e-11	7.251935e-12
13	7979033	7951633	NM_024740	ALG9	0.669200	6.035817e-15	1.045826e-10	8.044816e-12
14	7979033	7928300	NM_173473	ANAPC16	0.669151	6.073777e-15	1.052403e-10	7.517167e-12
15	7979033	8174338	NM_024657	MORC4	-0.666305	8.682551e-15	1.504426e-10	1.002950e-11
16	7979033	7923798	NM_022731	NUCKS1	0.666174	8.824908e-15	1.529092e-10	9.556823e-12
17	7979033	8038139	NM_145807	NTN5	-0.665711	9.350221e-15	1.620113e-10	9.530075e-12
18	7979033	7920317	NM_004515	ILF2	0.663433	1.240289e-14	2.149049e-10	1.193916e-11
19	7979033	7967149	NM_016237	ANAPC5	0.663392	1.246619e-14	2.160016e-10	1.136850e-11
20	7979033	8161988	NM_013438	UBQLN1	0.662677	1.361443e-14	2.358973e-10	1.179486e-11
21	7979033	8072946	NM_016091	EIF3L	0.659710	1.957940e-14	3.392523e-10	1.615487e-11
22	7979033	7919226	NM_006468	POLR3C	0.658129	2.372162e-14	4.110245e-10	1.868293e-11
23	7979033	7985044	NM_173469	UBE2Q2	0.657498	2.560076e-14	4.435843e-10	1.928627e-11
24	7979033	7968898	BC039586	KIAA1704	0.656932	2.741156e-14	4.749601e-10	1.979000e-11
25	7979033	8099570	BC050697	DCAF16	0.655581	3.224566e-14	5.587206e-10	2.234882e-11
26	7979033	7961964	NM_018164	C12orf11	0.655040	3.440352e-14	5.961098e-10	2.292730e-11
27	7979033	8150818	NM_006756	TCEA1	0.653352	4.207431e-14	7.290215e-10	2.700080e-11
28	7979033	7933366	NM_016204	GDF2	-0.650278	6.050605e-14	1.048388e-9	3.744244e-11
29	7979033	8052562	NM_006430	CCT4	0.650001	6.251055e-14	1.083120e-9	3.734898e-11
30	7979033	7984263	NM_016395	PTPLAD1	0.649903	6.323001e-14	1.095586e-9	3.651955e-11
31	7979033	8017621	NM_007215	POLG2	0.649423	6.689458e-14	1.159082e-9	3.738975e-11
32	7979033	7981919	NM_022807	SNRPN	0.648855	7.149264e-14	1.238753e-9	3.871103e-11
33	7979033	8163795	NM_005047	PSMD5	0.647924	7.969260e-14	1.380834e-9	4.184344e-11
34	7979033	8035801	ENST00000364165		-0.646126	9.819662e-14	1.701453e-9	5.004273e-11
35	7979033	8142912	NM_032842	TMEM209	0.646069	9.885013e-14	1.712776e-9	4.893646e-11
36	7979033	7915995	NM_007051	FAF1	0.645517	1.053626e-13	1.825617e-9	5.071159e-11
37	7979033	8042207	NM_152516	COMMD1	0.645157	1.098275e-13	1.902981e-9	5.143191e-11
38	7979033	8170971	NM_001363	DKC1	0.644978	1.121264e-13	1.942814e-9	5.112669e-11
39	7979033	8020323	NM_003799	RNMT	0.644569	1.175315e-13	2.036469e-9	5.221714e-11
40	7979033	8111629	NM_153485	NUP155	0.644344	1.206079e-13	2.089773e-9	5.224432e-11
41	7979033	8160478	BC071953	C9orf82	0.644343	1.206174e-13	2.089937e-9	5.097408e-11
42	7979033	8136631	NM_003143	SSBP1	0.644142	1.234370e-13	2.138792e-9	5.092363e-11
43	7979033	8104350	NM_015325	KIAA0947	0.643952	1.261662e-13	2.186082e-9	5.083913e-11
44	7979033	8147447	NM_014754	PTDSS1	0.643140	1.384642e-13	2.399169e-9	5.452657e-11
45	7979033	8068168	NM_000454	SOD1	0.642898	1.423520e-13	2.466533e-9	5.481184e-11
46	7979033	8050367	NM_015909	NBAS	0.642278	1.528026e-13	2.647610e-9	5.755675e-11
47	7979033	7914996	BX538212	MEAF6	0.641429	1.683228e-13	2.916529e-9	6.205381e-11
48	7979033	8111892	NM_000436	OXCT1	0.641378	1.692990e-13	2.933444e-9	6.111341e-11
49	7979033	8043861	NM_015904	EIF5B	0.641165	1.734484e-13	3.005341e-9	6.133349e-11
50	7979033	8110090	NM_022754	SFXN1	0.640621	1.844939e-13	3.196726e-9	6.393451e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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