[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4374	7973745	NM_005249	FOXG1		forkhead box G1

Fetching correlation data, please wait...
Getting list of correlations for id 4374.
Getting list of p-values for id 4374.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7973745	8153876	NM_025251	ARHGAP39	0.838763	5.979148e-29	1.036007e-24	1.036007e-24
2	7973745	8001149	NM_018206	VPS35	-0.832708	3.391935e-28	5.877207e-24	2.938603e-24
3	7973745	8030181	NM_033378	CGB2	0.829804	7.610338e-28	1.318643e-23	4.395477e-24
4	7973745	8039362	NM_178837	C19orf51	0.828083	1.219781e-27	2.113515e-23	5.283788e-24
5	7973745	7937560	NM_002457	MUC2	0.825895	2.204775e-27	3.820213e-23	7.640426e-24
6	7973745	7935983	NM_005029	PITX3	0.823959	3.698702e-27	6.408741e-23	1.068123e-23
7	7973745	8110382	NM_030567	PRR7	0.823202	4.519541e-27	7.831009e-23	1.118716e-23
8	7973745	8074131	NM_001080420	SHANK3	0.822908	4.883831e-27	8.462214e-23	1.057777e-23
9	7973745	7936882	NM_001146340	NKX1-2	0.822414	5.563245e-27	9.639434e-23	1.071048e-23
10	7973745	8064676	NM_145762	GFRA4	0.822027	6.157694e-27	1.066944e-22	1.066944e-23
11	7973745	7927367	NM_001040084	ANXA8	0.821892	6.380052e-27	1.105472e-22	1.004974e-23
12	7973745	8002845	NM_001025200	CTRB2	0.820285	9.700310e-27	1.680773e-22	1.400644e-23
13	7973745	7991332	NM_018670	MESP1	0.819562	1.169736e-26	2.026801e-22	1.559078e-23
14	7973745	8153346	NM_023946	LYNX1	0.819417	1.214213e-26	2.103867e-22	1.502762e-23
15	7973745	8137330	ENST00000356058		0.817312	2.083347e-26	3.609816e-22	2.406544e-23
16	7973745	7952893	BC024764	IQSEC3	0.815288	3.477659e-26	6.025740e-22	3.766088e-23
17	7973745	8006562	NM_033315	RASL10B	0.815265	3.497607e-26	6.060304e-22	3.564885e-23
18	7973745	8133704	NM_001110199	SRRM3	0.814903	3.831202e-26	6.638324e-22	3.687958e-23
19	7973745	8098740	NM_033178	DUX4	0.814761	3.969875e-26	6.878603e-22	3.620317e-23
20	7973745	8153101	NM_152888	COL22A1	0.813704	5.170271e-26	8.958529e-22	4.479264e-23
21	7973745	7896822	NM_198576	AGRN	0.813298	5.721435e-26	9.913530e-22	4.720729e-23
22	7973745	8098732	NM_033178	DUX4	0.813044	6.093094e-26	1.055750e-21	4.798865e-23
23	7973745	8029693	NM_006732	FOSB	0.811837	8.214297e-26	1.423291e-21	6.188223e-23
24	7973745	7945688	NR_003512	INS-IGF2	0.811691	8.514943e-26	1.475384e-21	6.147434e-23
25	7973745	7896921	NM_152228	TAS1R3	0.811309	9.352449e-26	1.620499e-21	6.481995e-23
26	7973745	7998015	NM_032451	SPIRE2	0.810875	1.040308e-25	1.802541e-21	6.932850e-23
27	7973745	8015210	NM_033184	KRTAP2-4	0.810872	1.041273e-25	1.804214e-21	6.682273e-23
28	7973745	8019576	NM_033184	KRTAP2-4	0.810872	1.041273e-25	1.804214e-21	6.443620e-23
29	7973745	8067409	NM_005560	LAMA5	0.810818	1.055095e-25	1.828163e-21	6.304010e-23
30	7973745	8060604	NM_000915	OXT	0.810680	1.091365e-25	1.891008e-21	6.303360e-23
31	7973745	7937363	NM_007183	PKP3	0.810066	1.268020e-25	2.197098e-21	7.087413e-23
32	7973745	8093826	NM_000683	ADRA2C	0.809150	1.584364e-25	2.745227e-21	8.578836e-23
33	7973745	8098721	ENST00000362702		0.808455	1.874891e-25	3.248623e-21	9.844312e-23
34	7973745	8125234	NM_019105	TNXB	0.808379	1.909571e-25	3.308714e-21	9.731511e-23
35	7973745	7927307	NM_001630	ANXA8L2	0.808042	2.071336e-25	3.589003e-21	1.025429e-22
36	7973745	8013606	NM_000638	VTN	0.807857	2.165747e-25	3.752590e-21	1.042386e-22
37	7973745	8048460	NM_003936	CDK5R2	0.807800	2.195256e-25	3.803720e-21	1.028032e-22
38	7973745	8091048	NR_023350	COPB2	-0.806913	2.716277e-25	4.706493e-21	1.238551e-22
39	7973745	7911435	NM_001014980	FAM132A	0.806711	2.850984e-25	4.939901e-21	1.266641e-22
40	7973745	8027556	NM_002333	LRP3	0.805944	3.423414e-25	5.931749e-21	1.482937e-22
41	7973745	8121209	NM_005604	POU3F2	0.805514	3.791801e-25	6.570053e-21	1.602452e-22
42	7973745	8049942	NM_080741	NEU4	0.805239	4.047708e-25	7.013464e-21	1.669872e-22
43	7973745	7991828	ENST00000431654		0.804879	4.407655e-25	7.637144e-21	1.776080e-22
44	7973745	8137228	NM_173680	ZNF775	0.804416	4.917430e-25	8.520432e-21	1.936462e-22
45	7973745	8050565	NM_015317	PUM2	-0.803880	5.579397e-25	9.667421e-21	2.148316e-22
46	7973745	8038299	NM_033142	CGB7	0.803157	6.612199e-25	1.145696e-20	2.490643e-22
47	7973745	8074558	NM_023004	RTN4R	0.803052	6.776355e-25	1.174139e-20	2.498168e-22
48	7973745	8131087	NM_001080461	UNCX	0.802846	7.111141e-25	1.232147e-20	2.566974e-22
49	7973745	7911376	NM_001142467	HES4	0.802823	7.150119e-25	1.238901e-20	2.528370e-22
50	7973745	7931519	NM_152643	KNDC1	0.802719	7.326297e-25	1.269428e-20	2.538855e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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