[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3438	7986822	NM_000814	GABRB3		gamma-aminobutyric acid (GABA) A receptor, beta 3

Fetching correlation data, please wait...
Getting list of correlations for id 3438.
Getting list of p-values for id 3438.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7986822	8125234	NM_019105	TNXB	0.808950	1.663199e-25	2.881825e-21	2.881825e-21
2	7986822	8036252	NM_015526	CLIP3	0.792152	8.052016e-24	1.395173e-19	6.975864e-20
3	7986822	7960894	NR_024420	LOC389634	0.788565	1.761081e-23	3.051425e-19	1.017142e-19
4	7986822	8000903	NM_023931	ZNF747	0.782057	7.011138e-23	1.214820e-18	3.037050e-19
5	7986822	7945536	NM_016564	CEND1	0.781237	8.315096e-23	1.440757e-18	2.881513e-19
6	7986822	8074131	NM_001080420	SHANK3	0.780803	9.099254e-23	1.576628e-18	2.627713e-19
7	7986822	8006562	NM_033315	RASL10B	0.780299	1.010048e-22	1.750110e-18	2.500157e-19
8	7986822	8062948	NM_014276	RBPJL	0.779730	1.135816e-22	1.968028e-18	2.460035e-19
9	7986822	7914361	NM_001856	COL16A1	0.778746	1.390460e-22	2.409251e-18	2.676945e-19
10	7986822	7949015	NM_001144936	C11orf95	0.776897	2.027827e-22	3.513616e-18	3.513616e-19
11	7986822	8035249	NM_005234	NR2F6	0.773348	4.142792e-22	7.178216e-18	6.525651e-19
12	7986822	7900352	NM_022120	OXCT2	0.772758	4.659083e-22	8.072793e-18	6.727328e-19
13	7986822	7915257	NM_022120	OXCT2	0.772758	4.659083e-22	8.072793e-18	6.209841e-19
14	7986822	7927307	NM_001630	ANXA8L2	0.772656	4.754672e-22	8.238420e-18	5.884586e-19
15	7986822	7945688	NR_003512	INS-IGF2	0.771462	6.023462e-22	1.043685e-17	6.957902e-19
16	7986822	8098512	NM_021942	C4orf41	-0.771108	6.459704e-22	1.119273e-17	6.995456e-19
17	7986822	8126018	NM_007271	STK38	-0.770213	7.702264e-22	1.334571e-17	7.850419e-19
18	7986822	8033825	NM_015719	COL5A3	0.768534	1.069425e-21	1.852993e-17	1.029440e-18
19	7986822	7927367	NM_001040084	ANXA8	0.768032	1.179119e-21	2.043060e-17	1.075295e-18
20	7986822	8045332	ENST00000458407		0.767515	1.303412e-21	2.258423e-17	1.129211e-18
21	7986822	8133704	NM_001110199	SRRM3	0.767100	1.412250e-21	2.447005e-17	1.165240e-18
22	7986822	8029530	NM_000041	APOE	0.766993	1.441805e-21	2.498216e-17	1.135553e-18
23	7986822	7981447	NM_001100119	XRCC3	0.766436	1.605254e-21	2.781423e-17	1.209314e-18
24	7986822	7966690	NM_016569	TBX3	0.766065	1.724121e-21	2.987385e-17	1.244744e-18
25	7986822	8074063	NM_024866	ADM2	0.765948	1.763258e-21	3.055196e-17	1.222079e-18
26	7986822	8171087	NM_013239	PPP2R3B	0.765290	2.000758e-21	3.466714e-17	1.333351e-18
27	7986822	8061815	NM_182658	C20orf185	0.764751	2.217829e-21	3.842833e-17	1.423271e-18
28	7986822	8158554	NM_016307	PRRX2	0.764318	2.408742e-21	4.173628e-17	1.490581e-18
29	7986822	8131056	NM_017781	CYP2W1	0.762136	3.642877e-21	6.312013e-17	2.176556e-18
30	7986822	8153409	NM_201589	MAFA	0.759822	5.621375e-21	9.740156e-17	3.246719e-18
31	7986822	8031499	AF086519	SSC5D	0.759413	6.066824e-21	1.051199e-16	3.390963e-18
32	7986822	7935834	NM_024895	PDZD7	0.758344	7.397468e-21	1.281759e-16	4.005498e-18
33	7986822	8060505	NM_001110514	EBF4	0.757499	8.647942e-21	1.498429e-16	4.540694e-18
34	7986822	8019699	NM_033059	KRTAP4-11	0.756965	9.540469e-21	1.653077e-16	4.861991e-18
35	7986822	8104592	NM_012304	FBXL7	0.756832	9.778100e-21	1.694251e-16	4.840718e-18
36	7986822	7935983	NM_005029	PITX3	0.756705	1.000864e-20	1.734198e-16	4.817216e-18
37	7986822	7945641	NM_004420	DUSP8	0.756531	1.033369e-20	1.790519e-16	4.839241e-18
38	7986822	8086985	NM_000094	COL7A1	0.756394	1.059503e-20	1.835801e-16	4.831055e-18
39	7986822	8103011	NM_199324	OTUD4	-0.756032	1.132251e-20	1.961852e-16	5.030389e-18
40	7986822	8008201	NM_002507	NGFR	0.755876	1.165093e-20	2.018756e-16	5.046890e-18
41	7986822	8173613	NM_016120	RLIM	-0.755815	1.178161e-20	2.041399e-16	4.979023e-18
42	7986822	8063796	NM_001794	CDH4	0.755666	1.210714e-20	2.097804e-16	4.994772e-18
43	7986822	8136080	NM_005631	SMO	0.755323	1.288839e-20	2.233171e-16	5.193421e-18
44	7986822	8087596	NM_003549	HYAL3	0.754623	1.464226e-20	2.537064e-16	5.766054e-18
45	7986822	8112592	NM_004472	FOXD1	0.753193	1.897254e-20	3.287372e-16	7.305270e-18
46	7986822	8164632	NM_032843	FIBCD1	0.752654	2.090823e-20	3.622770e-16	7.875586e-18
47	7986822	8024048	NM_002777	PRTN3	0.752545	2.132291e-20	3.694620e-16	7.860894e-18
48	7986822	7992269	ENST00000301714		0.752514	2.144099e-20	3.715079e-16	7.739749e-18
49	7986822	8093171	NM_005929	MFI2	0.752121	2.301405e-20	3.987644e-16	8.138049e-18
50	7986822	8040792	NM_007046	EMILIN1	0.752023	2.342150e-20	4.058243e-16	8.116487e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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