[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2675	8107998	NM_014402	UQCRQ		ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa

Fetching correlation data, please wait...
Getting list of correlations for id 2675.
Getting list of p-values for id 2675.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.151 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8107998	8042259	NM_005917	MDH1	0.679940	1.511228e-15	2.618504e-11	2.618504e-11
2	8107998	7908766	NM_006335	TIMM17A	0.634566	3.638472e-13	6.304381e-9	3.152190e-9
3	8107998	8002987	NM_020188	C16orf61	0.634033	3.860120e-13	6.688431e-9	2.229477e-9
4	8107998	7971375	NM_003295	TPT1	0.628973	6.724527e-13	1.165159e-8	2.912897e-9
5	8107998	7973414	NM_015514	NGDN	0.625899	9.375338e-13	1.624465e-8	3.248930e-9
6	8107998	7921987	NM_019026	TMCO1	0.622197	1.392275e-12	2.412394e-8	4.020657e-9
7	8107998	8073192	NM_006003	UQCRFS1	0.621891	1.438154e-12	2.491890e-8	3.559842e-9
8	8107998	8160033	NM_003094	SNRPE	0.621837	1.446368e-12	2.506121e-8	3.132652e-9
9	8107998	7974603	NM_002788	PSMA3	0.620046	1.747630e-12	3.028119e-8	3.364577e-9
10	8107998	8092265	NM_020409	MRPL47	0.618192	2.123129e-12	3.678746e-8	3.678746e-9
11	8107998	8020058	NM_021074	NDUFV2	0.617020	2.399287e-12	4.157244e-8	3.779313e-9
12	8107998	8144894	NM_018142	INTS10	0.614568	3.094141e-12	5.361218e-8	4.467681e-9
13	8107998	7921667	NM_001778	CD48	0.612579	3.796733e-12	6.578600e-8	5.060461e-9
14	8107998	8043932	NM_001099693	RPL31	0.612127	3.977002e-12	6.890951e-8	4.922108e-9
15	8107998	8004497	NM_001416	EIF4A1	0.608463	5.773184e-12	1.000320e-7	6.668797e-9
16	8107998	7934133	NM_021129	PPA1	0.605359	7.887550e-12	1.366676e-7	8.541723e-9
17	8107998	8172358	NM_153477	UXT	0.603836	9.181439e-12	1.590868e-7	9.358046e-9
18	8107998	7990916	NM_001021	RPS17	0.603339	9.646508e-12	1.671450e-7	9.285835e-9
19	8107998	7990965	NM_001021	RPS17	0.603339	9.646508e-12	1.671450e-7	8.797107e-9
20	8107998	7957052	NM_006431	CCT2	0.601513	1.155701e-11	2.002484e-7	1.001242e-8
21	8107998	7923007	NM_015984	UCHL5	0.599646	1.388645e-11	2.406106e-7	1.145765e-8
22	8107998	7917906	NM_000971	RPL7	0.599377	1.425727e-11	2.470357e-7	1.122890e-8
23	8107998	8128322	NM_014165	NDUFAF4	0.598279	1.587344e-11	2.750392e-7	1.195822e-8
24	8107998	8084092	NM_002492	NDUFB5	0.598146	1.607943e-11	2.786083e-7	1.160868e-8
25	8107998	8151376	NM_000971	RPL7	0.596921	1.811619e-11	3.138992e-7	1.255597e-8
26	8107998	8150870	NM_002806	PSMC6	0.596888	1.817443e-11	3.149084e-7	1.211186e-8
27	8107998	8039068	NM_021074	NDUFV2	0.596382	1.908797e-11	3.307373e-7	1.224953e-8
28	8107998	7953243	NM_005002	NDUFA9	0.595701	2.038997e-11	3.532970e-7	1.261775e-8
29	8107998	7977571	NM_017807	OSGEP	0.595512	2.076468e-11	3.597896e-7	1.240654e-8
30	8107998	7988031	NM_001006	RPS3A	0.594930	2.196606e-11	3.806060e-7	1.268687e-8
31	8107998	8171834	NM_000661	RPL9	0.594777	2.229109e-11	3.862377e-7	1.245928e-8
32	8107998	8109222	NM_000971	RPL7	0.594136	2.371099e-11	4.108403e-7	1.283876e-8
33	8107998	8152648	BC067796	C8orf76	0.592947	2.657762e-11	4.605105e-7	1.395486e-8
34	8107998	7935462	NM_016046	EXOSC1	0.592685	2.725205e-11	4.721963e-7	1.388813e-8
35	8107998	7917741	NM_016040	TMED5	0.592052	2.895378e-11	5.016822e-7	1.433378e-8
36	8107998	8081073	NM_173824	C3orf38	0.591948	2.924224e-11	5.066803e-7	1.407445e-8
37	8107998	8046346	NM_003642	HAT1	0.591763	2.976355e-11	5.157131e-7	1.393819e-8
38	8107998	7898875	NM_000975	RPL11	0.591489	3.055158e-11	5.293672e-7	1.393071e-8
39	8107998	7918345	NM_002790	PSMA5	0.590884	3.236299e-11	5.607536e-7	1.437830e-8
40	8107998	7920492	NM_001098616	C1orf43	0.590237	3.441576e-11	5.963218e-7	1.490804e-8
41	8107998	7990898	NM_000661	RPL9	0.588124	4.202385e-11	7.281473e-7	1.775969e-8
42	8107998	7927786	NM_001001330	REEP3	0.587960	4.267897e-11	7.394985e-7	1.760711e-8
43	8107998	7899737	NM_003757	EIF3I	0.587960	4.267973e-11	7.395116e-7	1.719795e-8
44	8107998	8107520	NM_014350	TNFAIP8	0.587912	4.287391e-11	7.428763e-7	1.688355e-8
45	8107998	8040036	NM_001011	RPS7	0.586823	4.749376e-11	8.229244e-7	1.828721e-8
46	8107998	7990949	NM_000661	RPL9	0.586118	5.073567e-11	8.790970e-7	1.911080e-8
47	8107998	8097782	NM_001006	RPS3A	0.585995	5.132312e-11	8.892756e-7	1.892076e-8
48	8107998	8099887	NM_001024921	RPL9	0.584738	5.771241e-11	9.999830e-7	2.083298e-8
49	8107998	8131479	NM_019005	MIOS	0.584050	6.152882e-11	1.066110e-6	2.175734e-8
50	8107998	7955768	NM_002624	PFDN5	0.582367	7.191075e-11	1.245998e-6	2.491995e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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