[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7268	8164853	NM_020469	ABO		ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)

Fetching correlation data, please wait...
Getting list of correlations for id 7268.
Getting list of p-values for id 7268.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.169 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8164853	8039362	NM_178837	C19orf51	0.821985	6.225488e-27	1.078690e-22	1.078690e-22
2	8164853	8133504	NM_032999	GTF2I	-0.819864	1.081966e-26	1.874722e-22	9.373612e-23
3	8164853	8076007	NM_025045	BAIAP2L2	0.816287	2.702828e-26	4.683189e-22	1.561063e-22
4	8164853	7955019	NM_152641	ARID2	-0.816031	2.883482e-26	4.996210e-22	1.249052e-22
5	8164853	8005328	NM_016239	MYO15A	0.815505	3.292378e-26	5.704704e-22	1.140941e-22
6	8164853	8048551	NM_005876	SPEG	0.812713	6.614997e-26	1.146181e-21	1.910301e-22
7	8164853	8151609	NM_172239	REXO1L1	0.809156	1.582016e-25	2.741159e-21	3.915942e-22
8	8164853	8132070	NM_002047	GARS	-0.808433	1.884768e-25	3.265737e-21	4.082172e-22
9	8164853	8121209	NM_005604	POU3F2	0.807524	2.345899e-25	4.064740e-21	4.516378e-22
10	8164853	7927307	NM_001630	ANXA8L2	0.807276	2.490184e-25	4.314741e-21	4.314741e-22
11	8164853	8125234	NM_019105	TNXB	0.806662	2.884495e-25	4.997965e-21	4.543604e-22
12	8164853	7936882	NM_001146340	NKX1-2	0.803052	6.776505e-25	1.174165e-20	9.784709e-22
13	8164853	7995310	ENST00000319817		0.802126	8.412661e-25	1.457662e-20	1.121278e-21
14	8164853	7927367	NM_001040084	ANXA8	0.801114	1.064047e-24	1.843675e-20	1.316910e-21
15	8164853	8107646	NM_001136239	PRDM6	0.799722	1.467120e-24	2.542079e-20	1.694720e-21
16	8164853	7945162	NM_003658	BARX2	0.798301	2.030654e-24	3.518515e-20	2.199072e-21
17	8164853	8155942	NM_001013735	FOXB2	0.797638	2.361070e-24	4.091025e-20	2.406486e-21
18	8164853	7917156	NM_003902	FUBP1	-0.797352	2.519781e-24	4.366024e-20	2.425569e-21
19	8164853	8131056	NM_017781	CYP2W1	0.796798	2.855876e-24	4.948377e-20	2.604409e-21
20	8164853	8029693	NM_006732	FOSB	0.796560	3.013789e-24	5.221992e-20	2.610996e-21
21	8164853	8000467	NM_001109763	GSG1L	0.795760	3.608654e-24	6.252715e-20	2.977483e-21
22	8164853	8142971	NM_138693	KLF14	0.795659	3.691869e-24	6.396902e-20	2.907683e-21
23	8164853	7913450	NM_005529	HSPG2	0.793674	5.750589e-24	9.964046e-20	4.332194e-21
24	8164853	8049942	NM_080741	NEU4	0.793269	6.291075e-24	1.090055e-19	4.541894e-21
25	8164853	7937560	NM_002457	MUC2	0.791520	9.253577e-24	1.603367e-19	6.413469e-21
26	8164853	7931519	NM_152643	KNDC1	0.790660	1.117079e-23	1.935563e-19	7.444472e-21
27	8164853	8075200	NM_012265	RHBDD3	0.790579	1.137148e-23	1.970336e-19	7.297541e-21
28	8164853	8035249	NM_005234	NR2F6	0.789780	1.353191e-23	2.344675e-19	8.373838e-21
29	8164853	8024306	NM_005883	APC2	0.789113	1.564073e-23	2.710069e-19	9.345066e-21
30	8164853	8067409	NM_005560	LAMA5	0.788926	1.628894e-23	2.822384e-19	9.407948e-21
31	8164853	7992460	NM_001099456	NPW	0.788282	1.871980e-23	3.243580e-19	1.046316e-20
32	8164853	8119386	DQ168992	TDRG1	0.788265	1.878820e-23	3.255432e-19	1.017322e-20
33	8164853	8158666	AK128680	HMCN2	0.787893	2.035325e-23	3.526608e-19	1.068669e-20
34	8164853	8159036	NM_139025	ADAMTS13	0.787432	2.247486e-23	3.894218e-19	1.145358e-20
35	8164853	8074131	NM_001080420	SHANK3	0.787380	2.272734e-23	3.937966e-19	1.125133e-20
36	8164853	7897416	NM_001080397	SLC45A1	0.787144	2.391041e-23	4.142957e-19	1.150821e-20
37	8164853	7971820	NM_016075	VPS36	-0.786934	2.500742e-23	4.333035e-19	1.171091e-20
38	8164853	8137330	ENST00000356058		0.786499	2.744693e-23	4.755730e-19	1.251508e-20
39	8164853	7939341	NM_000610	CD44	-0.785468	3.419027e-23	5.924148e-19	1.519012e-20
40	8164853	8156415	NM_006648	WNK2	0.785331	3.519442e-23	6.098137e-19	1.524534e-20
41	8164853	7949080	NM_015080	NRXN2	0.785315	3.531623e-23	6.119243e-19	1.492498e-20
42	8164853	8018379	NM_020753	CASKIN2	0.784960	3.807799e-23	6.597774e-19	1.570898e-20
43	8164853	8060604	NM_000915	OXT	0.784599	4.110338e-23	7.121983e-19	1.656275e-20
44	8164853	8110522	NM_001746	CANX	-0.784381	4.304267e-23	7.458003e-19	1.695001e-20
45	8164853	8038299	NM_033142	CGB7	0.784357	4.325936e-23	7.495550e-19	1.665678e-20
46	8164853	8054614	NM_022662	ANAPC1	-0.784172	4.497999e-23	7.793683e-19	1.694279e-20
47	8164853	8028389	NM_001042522	SPRED3	0.783948	4.716235e-23	8.171820e-19	1.738685e-20
48	8164853	7998015	NM_032451	SPIRE2	0.783876	4.787519e-23	8.295335e-19	1.728195e-20
49	8164853	8096556	NM_015143	METAP1	-0.783628	5.044003e-23	8.739745e-19	1.783621e-20
50	8164853	8028407	NM_000540	RYR1	0.783537	5.142013e-23	8.909567e-19	1.781913e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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