[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3948	8041888	NM_000179	MSH6		mutS homolog 6 (E. coli)

Fetching correlation data, please wait...
Getting list of correlations for id 3948.
Getting list of p-values for id 3948.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8041888	8020058	NM_021074	NDUFV2	0.791372	9.558672e-24	1.656231e-19	1.656231e-19
2	8041888	8039068	NM_021074	NDUFV2	0.784677	4.043294e-23	7.005815e-19	3.502907e-19
3	8041888	8104350	NM_015325	KIAA0947	0.780510	9.668348e-23	1.675235e-18	5.584116e-19
4	8041888	8136631	NM_003143	SSBP1	0.780142	1.043319e-22	1.807759e-18	4.519398e-19
5	8041888	7903519	NM_018061	PRPF38B	0.772559	4.846777e-22	8.398010e-18	1.679602e-18
6	8041888	7901479	NM_024646	ZYG11B	0.771758	5.681133e-22	9.843699e-18	1.640617e-18
7	8041888	8052562	NM_006430	CCT4	0.768642	1.047154e-21	1.814404e-17	2.592005e-18
8	8041888	8135235	NM_004279	PMPCB	0.767078	1.418309e-21	2.457504e-17	3.071880e-18
9	8041888	8089584	NM_015412	C3orf17	0.766477	1.592890e-21	2.760001e-17	3.066667e-18
10	8041888	7929168	NM_025235	TNKS2	0.766446	1.602220e-21	2.776167e-17	2.776167e-18
11	8041888	7909992	NM_015176	FBXO28	0.764321	2.407331e-21	4.171182e-17	3.791984e-18
12	8041888	8064581	NM_021826	FASTKD5	0.761744	3.922337e-21	6.796233e-17	5.663527e-18
13	8041888	8055021	NM_017969	IWS1	0.760922	4.577170e-21	7.930863e-17	6.100664e-18
14	8041888	8046213	NM_172070	UBR3	0.760247	5.193447e-21	8.998686e-17	6.427633e-18
15	8041888	7923712	NM_005057	RBBP5	0.759842	5.601253e-21	9.705291e-17	6.470194e-18
16	8041888	7943176	NM_004268	MED17	0.759542	5.922739e-21	1.026233e-16	6.413956e-18
17	8041888	8150089	NM_016127	TMEM66	0.759380	6.104017e-21	1.057643e-16	6.221429e-18
18	8041888	8019046	NM_014740	EIF4A3	0.758252	7.524478e-21	1.303766e-16	7.243146e-18
19	8041888	7980463	NM_012245	SNW1	0.758243	7.537883e-21	1.306089e-16	6.874152e-18
20	8041888	7957106	NM_014515	CNOT2	0.757472	8.691266e-21	1.505936e-16	7.529679e-18
21	8041888	8092564	NM_004593	TRA2B	0.756976	9.521291e-21	1.649754e-16	7.855972e-18
22	8041888	8018600	NM_014230	SRP68	0.756342	1.069719e-20	1.853503e-16	8.425013e-18
23	8041888	7970546	NM_152726	EFHA1	0.754983	1.371325e-20	2.376095e-16	1.033085e-17
24	8041888	7943580	NM_003478	CUL5	0.754504	1.496141e-20	2.592364e-16	1.080152e-17
25	8041888	8055060	NM_018383	WDR33	0.753971	1.648060e-20	2.855594e-16	1.142238e-17
26	8041888	7967304	NM_198261	RSRC2	0.753321	1.853691e-20	3.211890e-16	1.235342e-17
27	8041888	8172154	NM_002952	RPS2	0.753180	1.901480e-20	3.294694e-16	1.220257e-17
28	8041888	7973902	NM_003136	SRP54	0.752057	2.327920e-20	4.033587e-16	1.440567e-17
29	8041888	8150797	NM_015941	ATP6V1H	0.751068	2.778967e-20	4.815117e-16	1.660385e-17
30	8041888	8076515	NM_014570	ARFGAP3	0.749877	3.436507e-20	5.954436e-16	1.984812e-17
31	8041888	7990487	NM_015477	SIN3A	0.749870	3.440625e-20	5.961572e-16	1.923088e-17
32	8041888	7995421	NM_031490	LONP2	0.748995	4.018424e-20	6.962724e-16	2.175851e-17
33	8041888	8106122	NM_002270	TNPO1	0.747368	5.354292e-20	9.277382e-16	2.811328e-17
34	8041888	8093130	NM_152617	RNF168	0.745865	6.965459e-20	1.206905e-15	3.549721e-17
35	8041888	8041592	NM_019063	EML4	0.745020	8.069159e-20	1.398143e-15	3.994695e-17
36	8041888	8108015	NM_002154	HSPA4	0.744750	8.456726e-20	1.465297e-15	4.070269e-17
37	8041888	8152782	NM_014846	KIAA0196	0.744327	9.099677e-20	1.576701e-15	4.261354e-17
38	8041888	8081465	NM_001142568	BBX	0.744278	9.178319e-20	1.590327e-15	4.185072e-17
39	8041888	7944285	NM_001655	ARCN1	0.743125	1.119939e-19	1.940518e-15	4.975688e-17
40	8041888	8132943	NM_001762	CCT6A	0.743007	1.142960e-19	1.980408e-15	4.951019e-17
41	8041888	8001185	NM_005880	DNAJA2	0.742975	1.149323e-19	1.991432e-15	4.857151e-17
42	8041888	8101324	NM_031370	HNRNPD	0.742557	1.234965e-19	2.139825e-15	5.094820e-17
43	8041888	7979473	NM_016029	DHRS7	0.741952	1.370042e-19	2.373872e-15	5.520634e-17
44	8041888	8111629	NM_153485	NUP155	0.741852	1.393604e-19	2.414697e-15	5.487947e-17
45	8041888	8085852	NM_018297	NGLY1	0.741660	1.440133e-19	2.495318e-15	5.545150e-17
46	8041888	7947040	NM_194285	SPTY2D1	0.740205	1.845837e-19	3.198282e-15	6.952787e-17
47	8041888	8148674	NM_139021	MAPK15	-0.740034	1.900014e-19	3.292154e-15	7.004582e-17
48	8041888	7938422	NM_014633	CTR9	0.739803	1.976192e-19	3.424148e-15	7.133641e-17
49	8041888	7964262	NM_001113201	NACA	0.739556	2.060717e-19	3.570604e-15	7.286947e-17
50	8041888	8078600	NM_006756	TCEA1	0.739356	2.131792e-19	3.693756e-15	7.387511e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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