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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
5008 7923528 NM_002479 MYOG link to infopage myogenin (myogenic factor 4)

Fetching correlation data, please wait...
Getting list of correlations for id 5008.
Getting list of p-values for id 5008.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.118 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7923528 8119435 NM_004828 NCR2 link to infopage 0.748659 4.264250e-20 7.388666e-16 7.388666e-16
2 7923528 8003939 NM_003963 TM4SF5 link to infopage 0.727522 1.499391e-18 2.597995e-14 1.298997e-14
3 7923528 8026265 NM_080864 RLN3 link to infopage 0.688516 4.792310e-16 8.303635e-12 2.767878e-12
4 7923528 7905544 NM_005987 SPRR1A link to infopage 0.685271 7.435517e-16 1.288352e-11 3.220880e-12
5 7923528 8070786 NM_198688 KRTAP10-6 link to infopage 0.680621 1.381524e-15 2.393766e-11 4.787533e-12
6 7923528 8060126 NM_198998 AQP12A link to infopage 0.680266 1.447863e-15 2.508712e-11 4.181186e-12
7 7923528 7908812 NM_004767 GPR37L1 link to infopage 0.679747 1.550166e-15 2.685973e-11 3.837105e-12
8 7923528 8164077 NM_004959 NR5A1 link to infopage 0.679344 1.634525e-15 2.832142e-11 3.540177e-12
9 7923528 8139367 NM_013389 NPC1L1 link to infopage 0.679084 1.691331e-15 2.930569e-11 3.256188e-12
10 7923528 8010237 ENST00000340363 link to infopage 0.675825 2.586704e-15 4.481982e-11 4.481982e-12
11 7923528 8093576 NR_003004 SCARNA22 link to infopage 0.674939 2.900891e-15 5.026374e-11 4.569431e-12
12 7923528 8060765 NM_012409 PRND link to infopage 0.674749 2.972766e-15 5.150912e-11 4.292427e-12
13 7923528 7984892 NM_021819 LMAN1L link to infopage 0.673486 3.497785e-15 6.060613e-11 4.662010e-12
14 7923528 8110783 NM_198253 TERT link to infopage 0.671631 4.434237e-15 7.683202e-11 5.488002e-12
15 7923528 7976755 NM_207117 SLC25A47 link to infopage 0.671447 4.539229e-15 7.865121e-11 5.243414e-12
16 7923528 7999291 NM_152459 C16orf89 link to infopage 0.670731 4.972180e-15 8.615296e-11 5.384560e-12
17 7923528 8110821 NM_001044 SLC6A3 link to infopage 0.669193 6.041273e-15 1.046771e-10 6.157479e-12
18 7923528 8117741 NM_007160 OR2H2 link to infopage 0.669116 6.100171e-15 1.056977e-10 5.872092e-12
19 7923528 7987792 NM_178034 PLA2G4D link to infopage 0.666317 8.669247e-15 1.502120e-10 7.905897e-12
20 7923528 7901696 NM_174936 PCSK9 link to infopage 0.665559 9.528497e-15 1.651003e-10 8.255013e-12
21 7923528 8012837 NM_001101387 PIRT link to infopage 0.665302 9.838176e-15 1.704661e-10 8.117432e-12
22 7923528 8029236 NM_001410 MEGF8 link to infopage 0.664375 1.103783e-14 1.912525e-10 8.693296e-12
23 7923528 7905283 NM_003568 ANXA9 link to infopage 0.664122 1.138960e-14 1.973475e-10 8.580328e-12
24 7923528 8037422 NM_001031749 LYPD5 link to infopage 0.663363 1.251014e-14 2.167631e-10 9.031796e-12
25 7923528 8061366 NM_001052 SSTR4 link to infopage 0.662820 1.337605e-14 2.317668e-10 9.270674e-12
26 7923528 8068496 NM_009586 SIM2 link to infopage 0.662542 1.384294e-14 2.398566e-10 9.225253e-12
27 7923528 7927099 NR_026827 LOC84856 link to infopage 0.661665 1.541810e-14 2.671495e-10 9.894425e-12
28 7923528 7928937 NM_004897 MINPP1 link to infopage -0.661654 1.543839e-14 2.675010e-10 9.553607e-12
29 7923528 8049729 NM_198998 AQP12A link to infopage 0.661393 1.594121e-14 2.762133e-10 9.524597e-12
30 7923528 8015223 NM_031854 KRTAP4-12 link to infopage 0.661235 1.625151e-14 2.815900e-10 9.386332e-12
31 7923528 8019565 NM_031854 KRTAP4-12 link to infopage 0.661235 1.625151e-14 2.815900e-10 9.083547e-12
32 7923528 8069161 NM_198697 KRTAP12-3 link to infopage 0.660539 1.769697e-14 3.066354e-10 9.582355e-12
33 7923528 8038670 NM_012427 KLK5 link to infopage 0.660120 1.862382e-14 3.226948e-10 9.778632e-12
34 7923528 8070563 NR_027243 C21orf128 link to infopage 0.660035 1.881846e-14 3.260674e-10 9.590217e-12
35 7923528 8029551 NM_000483 APOC2 link to infopage 0.658868 2.168928e-14 3.758101e-10 1.073743e-11
36 7923528 8168424 NM_006517 SLC16A2 link to infopage 0.657680 2.504474e-14 4.339501e-10 1.205417e-11
37 7923528 8048108 link to infopage 0.656869 2.761856e-14 4.785467e-10 1.293370e-11
38 7923528 7896822 NM_198576 AGRN link to infopage 0.656869 2.762029e-14 4.785767e-10 1.259412e-11
39 7923528 8086051 NM_015551 SUSD5 link to infopage 0.656505 2.885715e-14 5.000078e-10 1.282071e-11
40 7923528 8125805 NM_000841 GRM4 link to infopage 0.656272 2.967775e-14 5.142265e-10 1.285566e-11
41 7923528 8026900 NM_002248 KCNN1 link to infopage 0.655798 3.141708e-14 5.443638e-10 1.327717e-11
42 7923528 8043157 NM_198482 SH2D6 link to infopage 0.655485 3.261839e-14 5.651788e-10 1.345664e-11
43 7923528 7977978 NM_005864 EFS link to infopage 0.655079 3.424000e-14 5.932765e-10 1.379713e-11
44 7923528 8163086 NM_032012 C9orf5 link to infopage -0.654730 3.570070e-14 6.185861e-10 1.405877e-11
45 7923528 7906852 NM_175866 UHMK1 link to infopage -0.654683 3.590364e-14 6.221023e-10 1.382450e-11
46 7923528 8062658 NM_022896 LPIN3 link to infopage 0.654256 3.777772e-14 6.545746e-10 1.422988e-11
47 7923528 8016646 NM_000088 COL1A1 link to infopage 0.652899 4.440094e-14 7.693350e-10 1.636883e-11
48 7923528 8083119 NM_014245 RNF7 link to infopage -0.652414 4.702726e-14 8.148413e-10 1.697586e-11
49 7923528 8092686 NM_001004312 RTP2 link to infopage 0.652338 4.745266e-14 8.222123e-10 1.677984e-11
50 7923528 8087116 NM_001008269 TMEM89 link to infopage 0.651373 5.318783e-14 9.215855e-10 1.843171e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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