[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2732	8012837	NM_001101387	PIRT		phosphoinositide-interacting regulator of transient receptor potential channels

Fetching correlation data, please wait...
Getting list of correlations for id 2732.
Getting list of p-values for id 2732.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8012837	8003939	NM_003963	TM4SF5	0.749210	3.868387e-20	6.702755e-16	6.702755e-16
2	8012837	8073941	ENST00000411210		0.715934	9.196289e-18	1.593441e-13	7.967205e-14
3	8012837	8151613	AF495523	REXO1L1	0.710524	2.080144e-17	3.604266e-13	1.201422e-13
4	8012837	8151617	AF495523	REXO1L1	0.710524	2.080144e-17	3.604266e-13	9.010664e-14
5	8012837	8151605	AF495523	REXO1L1	0.710524	2.080144e-17	3.604266e-13	7.208532e-14
6	8012837	8151621	AF495523	REXO1L1	0.710524	2.080144e-17	3.604266e-13	6.007110e-14
7	8012837	8151625	AF495523	REXO1L1	0.710524	2.080144e-17	3.604266e-13	5.148951e-14
8	8012837	8018379	NM_020753	CASKIN2	0.697682	1.342956e-16	2.326941e-12	2.908676e-13
9	8012837	8070786	NM_198688	KRTAP10-6	0.696496	1.587357e-16	2.750413e-12	3.056014e-13
10	8012837	8170794	NM_001146151	AVPR2	0.696363	1.617493e-16	2.802631e-12	2.802631e-13
11	8012837	8119435	NM_004828	NCR2	0.691306	3.269789e-16	5.665564e-12	5.150512e-13
12	8012837	8157804	NM_182487	OLFML2A	0.688827	4.593257e-16	7.958737e-12	6.632281e-13
13	8012837	8086540	NM_020208	SLC6A20	0.682099	1.136051e-15	1.968436e-11	1.514182e-12
14	8012837	8150928	NM_003580	NSMAF	-0.682081	1.138747e-15	1.973107e-11	1.409362e-12
15	8012837	8033674	NM_024690	MUC16	0.681944	1.159646e-15	2.009318e-11	1.339546e-12
16	8012837	7913450	NM_005529	HSPG2	0.681209	1.278180e-15	2.214703e-11	1.384189e-12
17	8012837	7987792	NM_178034	PLA2G4D	0.678420	1.844998e-15	3.196828e-11	1.880487e-12
18	8012837	8000772	NM_031478	FAM57B	0.677902	1.974274e-15	3.420824e-11	1.900458e-12
19	8012837	8035648	NM_001001524	TM6SF2	0.677336	2.125542e-15	3.682926e-11	1.938382e-12
20	8012837	8101000	ENST00000437185		0.676185	2.468804e-15	4.277697e-11	2.138849e-12
21	8012837	7905490	NM_178434	LCE3C	0.675546	2.681948e-15	4.647011e-11	2.212862e-12
22	8012837	8010768			0.672269	4.087518e-15	7.082443e-11	3.219292e-12
23	8012837	8017499	NM_022579	CSHL1	0.671389	4.573213e-15	7.924007e-11	3.445220e-12
24	8012837	7952227	NM_015645	C1QTNF5	0.669499	5.812547e-15	1.007140e-10	4.196416e-12
25	8012837	8049509	NM_015893	PRLH	0.668745	6.392407e-15	1.107612e-10	4.430449e-12
26	8012837	8074701	NM_004173	SLC7A4	0.666733	8.229498e-15	1.425925e-10	5.484327e-12
27	8012837	8008228	NM_138281	DLX4	0.666124	8.880942e-15	1.538801e-10	5.699262e-12
28	8012837	8048108			0.666118	8.886654e-15	1.539790e-10	5.499252e-12
29	8012837	7923528	NM_002479	MYOG	0.665302	9.838176e-15	1.704661e-10	5.878141e-12
30	8012837	7936096	NM_014976	PDCD11	0.665047	1.015503e-14	1.759561e-10	5.865204e-12
31	8012837	8006679	ENST00000411344		0.664820	1.044554e-14	1.809899e-10	5.838384e-12
32	8012837	8004842	NM_173728	ARHGEF15	0.664477	1.089955e-14	1.888565e-10	5.901765e-12
33	8012837	7937560	NM_002457	MUC2	0.664054	1.148579e-14	1.990142e-10	6.030735e-12
34	8012837	8063476	NM_019888	MC3R	0.661134	1.645427e-14	2.851031e-10	8.385386e-12
35	8012837	7948937	NM_004254	SLC22A8	0.659986	1.893260e-14	3.280452e-10	9.372719e-12
36	8012837	8094938	NM_207330	NIPAL1	0.659150	2.095927e-14	3.631614e-10	1.008782e-11
37	8012837	8029458	NM_001039213	CEACAM16	0.659088	2.111845e-14	3.659193e-10	9.889711e-12
38	8012837	8153346	NM_023946	LYNX1	0.658656	2.225589e-14	3.856278e-10	1.014810e-11
39	8012837	7998015	NM_032451	SPIRE2	0.658652	2.226503e-14	3.857861e-10	9.891951e-12
40	8012837	8131506	NM_152745	NXPH1	0.657591	2.531619e-14	4.386536e-10	1.096634e-11
41	8012837	7944341	NM_006760	UPK2	0.657306	2.620242e-14	4.540093e-10	1.107340e-11
42	8012837	8061366	NM_001052	SSTR4	0.656285	2.963145e-14	5.134242e-10	1.222439e-11
43	8012837	8049729	NM_198998	AQP12A	0.655909	3.100147e-14	5.371625e-10	1.249215e-11
44	8012837	7920744	NM_000298	PKLR	0.655895	3.105266e-14	5.380494e-10	1.222839e-11
45	8012837	8037688	NM_030785	RSPH6A	0.655850	3.122173e-14	5.409789e-10	1.202175e-11
46	8012837	8072413	NM_134269	SMTN	0.655843	3.124674e-14	5.414123e-10	1.176983e-11
47	8012837	8034643	NM_001127221	CACNA1A	0.655490	3.259640e-14	5.647978e-10	1.201698e-11
48	8012837	8160889	NM_002989	CCL21	0.655368	3.307858e-14	5.731526e-10	1.194068e-11
49	8012837	8010237	ENST00000340363		0.655364	3.309357e-14	5.734122e-10	1.170229e-11
50	8012837	7955736	NM_012291	ESPL1	0.655270	3.346929e-14	5.799225e-10	1.159845e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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