[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6830	8063476	NM_019888	MC3R		melanocortin 3 receptor

Fetching correlation data, please wait...
Getting list of correlations for id 6830.
Getting list of p-values for id 6830.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8063476	8151625	AF495523	REXO1L1	0.773938	3.682235e-22	6.380209e-18	6.380209e-18
2	8063476	8151605	AF495523	REXO1L1	0.773938	3.682235e-22	6.380209e-18	3.190104e-18
3	8063476	8151613	AF495523	REXO1L1	0.773938	3.682235e-22	6.380209e-18	2.126736e-18
4	8063476	8151617	AF495523	REXO1L1	0.773938	3.682235e-22	6.380209e-18	1.595052e-18
5	8063476	8151621	AF495523	REXO1L1	0.773938	3.682235e-22	6.380209e-18	1.276042e-18
6	8063476	8007154	NM_021939	FKBP10	0.770378	7.457324e-22	1.292130e-17	2.153551e-18
7	8063476	8035648	NM_001001524	TM6SF2	0.762000	3.737588e-21	6.476119e-17	9.251599e-18
8	8063476	7937560	NM_002457	MUC2	0.761931	3.786842e-21	6.561461e-17	8.201826e-18
9	8063476	8131056	NM_017781	CYP2W1	0.760805	4.678652e-21	8.106700e-17	9.007444e-18
10	8063476	8030448	NM_001136052	CPT1C	0.760361	5.083661e-21	8.808460e-17	8.808460e-18
11	8063476	7987701	NM_016642	SPTBN5	0.755767	1.188538e-20	2.059379e-16	1.872163e-17
12	8063476	8160889	NM_002989	CCL21	0.755316	1.290423e-20	2.235917e-16	1.863264e-17
13	8063476	8010583	NR_027255	LOC388428	0.754702	1.443211e-20	2.500651e-16	1.923578e-17
14	8063476	8110821	NM_001044	SLC6A3	0.752361	2.203993e-20	3.818858e-16	2.727756e-17
15	8063476	7927367	NM_001040084	ANXA8	0.751712	2.476357e-20	4.290783e-16	2.860522e-17
16	8063476	7955305	NM_001652	AQP6	0.751314	2.659272e-20	4.607720e-16	2.879825e-17
17	8063476	7945688	NR_003512	INS-IGF2	0.750977	2.824742e-20	4.894430e-16	2.879077e-17
18	8063476	8115691	NM_003062	SLIT3	0.750761	2.935567e-20	5.086457e-16	2.825810e-17
19	8063476	8115849			0.749041	3.985783e-20	6.906166e-16	3.634824e-17
20	8063476	7927307	NM_001630	ANXA8L2	0.748782	4.172769e-20	7.230157e-16	3.615078e-17
21	8063476	8086391	NM_000729	CCK	0.746686	6.033972e-20	1.045506e-15	4.978602e-17
22	8063476	7949679	NM_006946	SPTBN2	0.746516	6.216162e-20	1.077074e-15	4.895793e-17
23	8063476	8117849	NM_033229	TRIM15	0.745828	7.010299e-20	1.214675e-15	5.281194e-17
24	8063476	8179070	NM_033229	TRIM15	0.745828	7.010299e-20	1.214675e-15	5.061144e-17
25	8063476	8177760	NM_033229	TRIM15	0.745828	7.010299e-20	1.214675e-15	4.858698e-17
26	8063476	8093576	NR_003004	SCARNA22	0.745348	7.621861e-20	1.320640e-15	5.079384e-17
27	8063476	8019576	NM_033184	KRTAP2-4	0.745267	7.729983e-20	1.339374e-15	4.960645e-17
28	8063476	8015210	NM_033184	KRTAP2-4	0.745267	7.729983e-20	1.339374e-15	4.783479e-17
29	8063476	8023450	NR_024546	TXNL1	-0.744259	9.208164e-20	1.595498e-15	5.501719e-17
30	8063476	7997533	NM_013370	OSGIN1	0.743604	1.031175e-19	1.786717e-15	5.955722e-17
31	8063476	8034643	NM_001127221	CACNA1A	0.743290	1.088657e-19	1.886317e-15	6.084892e-17
32	8063476	8153828	NM_003923	FOXH1	0.743140	1.117107e-19	1.935611e-15	6.048784e-17
33	8063476	7906307	NM_018240	KIRREL	0.742439	1.260249e-19	2.183633e-15	6.617070e-17
34	8063476	8003939	NM_003963	TM4SF5	0.742108	1.333796e-19	2.311068e-15	6.797258e-17
35	8063476	7998414	ENST00000428636		0.740642	1.713524e-19	2.969024e-15	8.482925e-17
36	8063476	8125843	NM_012391	SPDEF	0.740344	1.802775e-19	3.123667e-15	8.676854e-17
37	8063476	8132070	NM_002047	GARS	-0.740117	1.873566e-19	3.246329e-15	8.773861e-17
38	8063476	7993165			0.739739	1.997765e-19	3.461528e-15	9.109284e-17
39	8063476	8150928	NM_003580	NSMAF	-0.739605	2.043738e-19	3.541185e-15	9.079963e-17
40	8063476	7974229	NM_014315	KLHDC2	-0.739035	2.250691e-19	3.899773e-15	9.749432e-17
41	8063476	8055476	NR_024058	YWHAE	-0.738314	2.541865e-19	4.404289e-15	1.074217e-16
42	8063476	8119435	NM_004828	NCR2	0.738304	2.545935e-19	4.411342e-15	1.050320e-16
43	8063476	7911413	NM_003327	TNFRSF4	0.738250	2.569347e-19	4.451908e-15	1.035327e-16
44	8063476	7952290	NM_012101	TRIM29	0.737135	3.098718e-19	5.369149e-15	1.220261e-16
45	8063476	7937443	NM_022772	EPS8L2	0.736937	3.203375e-19	5.550487e-15	1.233442e-16
46	8063476	8044927	NM_002193	INHBB	0.735825	3.856629e-19	6.682382e-15	1.452692e-16
47	8063476	8138474	NM_198956	SP8	0.735779	3.886559e-19	6.734241e-15	1.432817e-16
48	8063476	7936762	NM_001001976	ATE1	-0.735509	4.065396e-19	7.044111e-15	1.467523e-16
49	8063476	7963020	NM_021044	DHH	0.735093	4.356385e-19	7.548309e-15	1.540471e-16
50	8063476	8075211	NM_001007279	RASL10A	0.734071	5.159414e-19	8.939716e-15	1.787943e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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