[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1055	8105908	NM_002538	OCLN		occludin

Fetching correlation data, please wait...
Getting list of correlations for id 1055.
Getting list of p-values for id 1055.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8105908	8177674	NM_001515	GTF2H2	0.504318	4.133435e-8	7.162004e-4	7.162004e-4
2	8105908	8105970	NM_001515	GTF2H2	0.502145	4.825916e-8	8.361864e-4	4.180932e-4
3	8105908	8105918	NM_001515	GTF2H2	0.496159	7.352643e-8	1.273992e-3	4.246641e-4
4	8105908	8177507	NM_001515	GTF2H2	0.491470	1.016893e-7	1.761971e-3	4.404927e-4
5	8105908	8112538	NM_001515	GTF2H2	0.491470	1.016893e-7	1.761971e-3	3.523942e-4
6	8105908	7995820	NM_005947	MT1B	-0.433059	3.947662e-6	6.840114e-2	1.140019e-2
7	8105908	8095376	NM_005953	MT2A	-0.415369	1.052566e-5	1.823781e-1	2.605401e-2
8	8105908	8095362	NM_005953	MT2A	-0.413816	1.144189e-5	1.982537e-1	2.478171e-2
9	8105908	8003149	NM_172347	KCNG4	-0.399601	2.410661e-5	4.176952e-1	4.641058e-2
10	8105908	8079598	NM_016089	ZNF589	0.398724	2.521360e-5	4.368760e-1	4.368760e-2
11	8105908	8125993	NM_016135	ETV7	-0.389767	3.958737e-5	6.859304e-1	6.235731e-2
12	8105908	7984227	NM_182703	ANKDD1A	-0.383214	5.461897e-5	9.463828e-1	7.886524e-2
13	8105908	7905754	NM_020452	ATP8B2	0.381179	6.027806e-5	1.044438e+0	8.034138e-2
14	8105908	7955450	NM_015416	LETMD1	0.379261	6.610948e-5	1.145479e+0	8.181993e-2
15	8105908	8089128	NM_014820	TOMM70A	0.379212	6.626283e-5	1.148136e+0	7.654240e-2
16	8105908	8119858	NM_006502	POLH	0.379110	6.658795e-5	1.153769e+0	7.211058e-2
17	8105908	8158686	NM_003934	FUBP3	0.379003	6.693203e-5	1.159731e+0	6.821949e-2
18	8105908	7976101	NM_024824	ZC3H14	0.377492	7.194839e-5	1.246650e+0	6.925832e-2
19	8105908	7984588	NM_024817	THSD4	-0.375195	8.024783e-5	1.390454e+0	7.318180e-2
20	8105908	8158864	NR_002914	SNORD62A	0.373867	8.544599e-5	1.480523e+0	7.402613e-2
21	8105908	8158862	NR_002914	SNORD62A	0.373867	8.544599e-5	1.480523e+0	7.050108e-2
22	8105908	8172158	NM_003688	CASK	0.372239	9.224194e-5	1.598276e+0	7.264891e-2
23	8105908	7963750	NM_012117	CBX5	0.370506	1.000323e-4	1.733259e+0	7.535908e-2
24	8105908	8012270	U58658		0.367657	1.141747e-4	1.978305e+0	8.242939e-2
25	8105908	8140037	NM_032408	BAZ1B	0.366232	1.219253e-4	2.112600e+0	8.450400e-2
26	8105908	8128138	NM_014611	MDN1	0.365513	1.260228e-4	2.183597e+0	8.398450e-2
27	8105908	8119107	ENST00000407672		-0.364722	1.306726e-4	2.264165e+0	8.385795e-2
28	8105908	8123364	NM_031409	CCR6	0.361102	1.540638e-4	2.669463e+0	9.533797e-2
29	8105908	8132182	NM_006658	C7orf16	-0.356950	1.856490e-4	3.216739e+0	1.109220e-1
30	8105908	8139460	NM_001146334	NACAD	-0.356115	1.926911e-4	3.338759e+0	1.112920e-1
31	8105908	8178445	NM_014069	PSORS1C2	-0.354913	2.032476e-4	3.521671e+0	1.136023e-1
32	8105908	8093256	ENST00000452862		0.353499	2.163606e-4	3.748880e+0	1.171525e-1
33	8105908	8011245	NM_018128	TSR1	0.352783	2.232954e-4	3.869039e+0	1.172436e-1
34	8105908	8025697	NM_012218	ILF3	0.352362	2.274722e-4	3.941411e+0	1.159238e-1
35	8105908	8101757	NM_198281	GPRIN3	0.351566	2.355507e-4	4.081387e+0	1.166111e-1
36	8105908	7966760	NM_033624	FBXO21	0.351192	2.394437e-4	4.148841e+0	1.152456e-1
37	8105908	8162531	ENST00000245183		-0.351063	2.408004e-4	4.172349e+0	1.127662e-1
38	8105908	8009929	NM_001162995	LOC643008	-0.350911	2.424026e-4	4.200111e+0	1.105292e-1
39	8105908	7930226	NM_014976	PDCD11	0.349957	2.527172e-4	4.378831e+0	1.122777e-1
40	8105908	7967175	NM_032590	KDM2B	0.349117	2.621243e-4	4.541827e+0	1.135457e-1
41	8105908	8048205	NM_000597	IGFBP2	-0.348490	2.693654e-4	4.667294e+0	1.138364e-1
42	8105908	8104825	NM_018321	BRIX1	0.347702	2.787112e-4	4.829229e+0	1.149816e-1
43	8105908	8062623	NM_002660	PLCG1	0.346891	2.886541e-4	5.001509e+0	1.163142e-1
44	8105908	7948192	NM_003146	SSRP1	0.344914	3.142734e-4	5.445416e+0	1.237595e-1
45	8105908	7897714	NM_001014765	FBXO44	-0.344407	3.211734e-4	5.564971e+0	1.236660e-1
46	8105908	8109693			-0.344110	3.252853e-4	5.636219e+0	1.225265e-1
47	8105908	7995793	NR_001447	MT1L	-0.343819	3.293505e-4	5.706656e+0	1.214182e-1
48	8105908	8158317	NM_001130438	SPTAN1	0.343713	3.308437e-4	5.732528e+0	1.194277e-1
49	8105908	7969835	NM_000282	PCCA	0.343696	3.310858e-4	5.736724e+0	1.170760e-1
50	8105908	8008664	NM_003488	AKAP1	0.343431	3.348445e-4	5.801850e+0	1.160370e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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