[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4473	7941401	NM_004561	OVOL1		ovo-like 1(Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 4473.
Getting list of p-values for id 4473.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7941401	7913450	NM_005529	HSPG2	0.719948	4.956855e-18	8.588743e-14	8.588743e-14
2	7941401	8022952	NM_020180	CELF4	0.709985	2.254333e-17	3.906082e-13	1.953041e-13
3	7941401	7955589	NM_002135	NR4A1	0.703701	5.673270e-17	9.830074e-13	3.276691e-13
4	7941401	8007259	ENST00000225928		0.703344	5.973880e-17	1.035094e-12	2.587735e-13
5	7941401	8106252	NM_000521	HEXB	-0.703191	6.108334e-17	1.058391e-12	2.116782e-13
6	7941401	8108453	NM_032289	PSD2	0.702660	6.594984e-17	1.142713e-12	1.904521e-13
7	7941401	7987701	NM_016642	SPTBN5	0.700987	8.389415e-17	1.453634e-12	2.076620e-13
8	7941401	7989985	NM_001004439	ITGA11	0.699433	1.047462e-16	1.814937e-12	2.268671e-13
9	7941401	8046922	NM_000090	COL3A1	0.698954	1.121394e-16	1.943039e-12	2.158932e-13
10	7941401	7938669	NM_014267	C11orf58	-0.697859	1.309663e-16	2.269252e-12	2.269252e-13
11	7941401	7896921	NM_152228	TAS1R3	0.697117	1.454554e-16	2.520305e-12	2.291187e-13
12	7941401	8115524	NM_014666	CLINT1	-0.693338	2.468754e-16	4.277611e-12	3.564676e-13
13	7941401	7950534	NM_004626	WNT11	0.692721	2.689343e-16	4.659824e-12	3.584480e-13
14	7941401	7912863	NR_002729	MST1P9	0.691603	3.138771e-16	5.438548e-12	3.884677e-13
15	7941401	8068496	NM_009586	SIM2	0.691345	3.252308e-16	5.635273e-12	3.756849e-13
16	7941401	7907882	NM_020950	KIAA1614	0.691175	3.329292e-16	5.768664e-12	3.605415e-13
17	7941401	8059028	NM_194302	CCDC108	0.690793	3.509309e-16	6.080580e-12	3.576812e-13
18	7941401	8170716	NM_005393	PLXNB3	0.689971	3.928009e-16	6.806062e-12	3.781145e-13
19	7941401	7921936	NM_177398	LMX1A	0.689263	4.327921e-16	7.498988e-12	3.946836e-13
20	7941401	7933310	ENST00000319426		0.687824	5.265087e-16	9.122817e-12	4.561408e-13
21	7941401	7943226	NM_001080486	FOLR4	0.687768	5.305148e-16	9.192230e-12	4.377253e-13
22	7941401	8005328	NM_016239	MYO15A	0.687552	5.463227e-16	9.466133e-12	4.302788e-13
23	7941401	8026735	NM_133644	GTPBP3	0.687543	5.469720e-16	9.477384e-12	4.120602e-13
24	7941401	7934367	NM_004034	ANXA7	-0.687221	5.713825e-16	9.900344e-12	4.125143e-13
25	7941401	8082788	NM_001134422	CDV3	-0.687188	5.739532e-16	9.944886e-12	3.977954e-13
26	7941401	8112592	NM_004472	FOXD1	0.686743	6.096458e-16	1.056333e-11	4.062820e-13
27	7941401	8137151	NM_198455	SSPO	0.686511	6.290391e-16	1.089936e-11	4.036800e-13
28	7941401	8011808	NM_001104577	GPR172B	0.686322	6.452872e-16	1.118089e-11	3.993176e-13
29	7941401	7914103	NM_001029882	AHDC1	0.685486	7.222999e-16	1.251529e-11	4.315617e-13
30	7941401	7966542	NM_004658	RASAL1	0.685332	7.373981e-16	1.277690e-11	4.258966e-13
31	7941401	7914260	NM_002379	MATN1	0.684732	7.993266e-16	1.384993e-11	4.467720e-13
32	7941401	8134827	NM_173564	C7orf51	0.683857	8.987977e-16	1.557347e-11	4.866709e-13
33	7941401	7997746	NM_020655	JPH3	0.683303	9.677139e-16	1.676758e-11	5.081085e-13
34	7941401	7903632	NM_001408	CELSR2	0.681400	1.246338e-15	2.159531e-11	6.351560e-13
35	7941401	8148208	NM_144963	FAM91A1	-0.680294	1.442395e-15	2.499238e-11	7.140680e-13
36	7941401	8125568	NM_080680	COL11A2	0.679581	1.584519e-15	2.745495e-11	7.626376e-13
37	7941401	8095048	NM_030917	FIP1L1	-0.679515	1.598296e-15	2.769368e-11	7.484779e-13
38	7941401	8010287	NM_030968	C1QTNF1	0.679388	1.625049e-15	2.815722e-11	7.409795e-13
39	7941401	7952893	BC024764	IQSEC3	0.678716	1.774951e-15	3.075458e-11	7.885790e-13
40	7941401	8133459	NM_003388	CLIP2	0.677643	2.042339e-15	3.538760e-11	8.846900e-13
41	7941401	8030251	NM_017636	TRPM4	0.677473	2.088091e-15	3.618035e-11	8.824475e-13
42	7941401	7977418	NM_001134875	C14orf80	0.676819	2.273579e-15	3.939430e-11	9.379595e-13
43	7941401	8156783	NM_001855	COL15A1	0.676063	2.508223e-15	4.345997e-11	1.010697e-12
44	7941401	8038093	NM_001080434	LMTK3	0.675950	2.545273e-15	4.410194e-11	1.002317e-12
45	7941401	8067409	NM_005560	LAMA5	0.674989	2.882329e-15	4.994212e-11	1.109825e-12
46	7941401	7937443	NM_022772	EPS8L2	0.674914	2.910312e-15	5.042697e-11	1.096238e-12
47	7941401	7927367	NM_001040084	ANXA8	0.673994	3.276588e-15	5.677345e-11	1.207946e-12
48	7941401	7984606	NM_014249	NR2E3	0.673874	3.327329e-15	5.765264e-11	1.201097e-12
49	7941401	8067270	NM_153360	APCDD1L	0.673663	3.418876e-15	5.923887e-11	1.208957e-12
50	7941401	8098512	NM_021942	C4orf41	-0.673558	3.465415e-15	6.004525e-11	1.200905e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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