[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4303	8003656	NM_000934	SERPINF2		serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2

Fetching correlation data, please wait...
Getting list of correlations for id 4303.
Getting list of p-values for id 4303.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8003656	8034469	NM_032301	FBXW9	0.755813	1.178618e-20	2.042191e-16	2.042191e-16
2	8003656	8157818	NM_001045476	WDR38	0.753784	1.704886e-20	2.954055e-16	1.477028e-16
3	8003656	7944447	NM_022169	ABCG4	0.751516	2.564889e-20	4.444183e-16	1.481394e-16
4	8003656	8003939	NM_003963	TM4SF5	0.747112	5.599607e-20	9.702439e-16	2.425610e-16
5	8003656	8115849			0.743354	1.076659e-19	1.865527e-15	3.731054e-16
6	8003656	8159036	NM_139025	ADAMTS13	0.740154	1.861738e-19	3.225833e-15	5.376389e-16
7	8003656	8151613	AF495523	REXO1L1	0.737618	2.857625e-19	4.951406e-15	7.073438e-16
8	8003656	8151605	AF495523	REXO1L1	0.737618	2.857625e-19	4.951406e-15	6.189258e-16
9	8003656	8151617	AF495523	REXO1L1	0.737618	2.857625e-19	4.951406e-15	5.501563e-16
10	8003656	8151621	AF495523	REXO1L1	0.737618	2.857625e-19	4.951406e-15	4.951406e-16
11	8003656	8151625	AF495523	REXO1L1	0.737618	2.857625e-19	4.951406e-15	4.501278e-16
12	8003656	7896921	NM_152228	TAS1R3	0.737201	3.064418e-19	5.309716e-15	4.424764e-16
13	8003656	7977978	NM_005864	EFS	0.735079	4.366225e-19	7.565358e-15	5.819506e-16
14	8003656	8048551	NM_005876	SPEG	0.734573	4.748795e-19	8.228237e-15	5.877312e-16
15	8003656	8064242	NR_027686	NCRNA00176	0.731428	7.965632e-19	1.380205e-14	9.201367e-16
16	8003656	8037732	NM_001029861	NANOS2	0.731267	8.178319e-19	1.417057e-14	8.856608e-16
17	8003656	7955184	NM_006262	PRPH	0.729657	1.062520e-18	1.841028e-14	1.082958e-15
18	8003656	8148559	NM_016647	C8orf55	0.729039	1.174285e-18	2.034683e-14	1.130379e-15
19	8003656	8131056	NM_017781	CYP2W1	0.727129	1.597012e-18	2.767142e-14	1.456391e-15
20	8003656	7903632	NM_001408	CELSR2	0.725717	2.001015e-18	3.467160e-14	1.733580e-15
21	8003656	8004842	NM_173728	ARHGEF15	0.725127	2.197695e-18	3.807946e-14	1.813308e-15
22	8003656	7927307	NM_001630	ANXA8L2	0.724701	2.351595e-18	4.074609e-14	1.852095e-15
23	8003656	7963880	NM_001144996	ITGA7	0.724676	2.360701e-18	4.090386e-14	1.778429e-15
24	8003656	8038299	NM_033142	CGB7	0.723848	2.691499e-18	4.663560e-14	1.943150e-15
25	8003656	8010237	ENST00000340363		0.723306	2.931551e-18	5.079498e-14	2.031799e-15
26	8003656	7927367	NM_001040084	ANXA8	0.721975	3.613239e-18	6.260659e-14	2.407946e-15
27	8003656	8032899	NM_182919	TICAM1	0.721450	3.922862e-18	6.797143e-14	2.517460e-15
28	8003656	8074212	NM_001037814	GAB4	0.717515	7.218558e-18	1.250760e-13	4.466998e-15
29	8003656	8125805	NM_000841	GRM4	0.717352	7.401715e-18	1.282495e-13	4.422397e-15
30	8003656	8038280	NM_000737	CGB	0.716119	8.939709e-18	1.548983e-13	5.163278e-15
31	8003656	8049509	NM_015893	PRLH	0.715662	9.586562e-18	1.661064e-13	5.358270e-15
32	8003656	8163599	NM_015404	DFNB31	0.715020	1.057042e-17	1.831537e-13	5.723554e-15
33	8003656	8157804	NM_182487	OLFML2A	0.714481	1.147184e-17	1.987725e-13	6.023410e-15
34	8003656	7992954	AK098732	TRAP1	0.713903	1.252233e-17	2.169744e-13	6.381600e-15
35	8003656	7959402	NM_030765	B3GNT4	0.712207	1.616984e-17	2.801748e-13	8.004993e-15
36	8003656	8070786	NM_198688	KRTAP10-6	0.711952	1.680200e-17	2.911283e-13	8.086897e-15
37	8003656	8046922	NM_000090	COL3A1	0.711737	1.735136e-17	3.006470e-13	8.125595e-15
38	8003656	8038292	NM_033043	CGB5	0.711384	1.829297e-17	3.169623e-13	8.341112e-15
39	8003656	7914667	NM_052896	CSMD2	0.711308	1.850310e-17	3.206033e-13	8.220597e-15
40	8003656	8148808	NM_032450	HEATR7A	0.709786	2.321931e-17	4.023210e-13	1.005803e-14
41	8003656	8148517	NM_001702	BAI1	0.709621	2.379700e-17	4.123306e-13	1.005684e-14
42	8003656	8054020	BC038583	FAM178B	0.709429	2.448468e-17	4.242460e-13	1.010110e-14
43	8003656	8038577	NM_001024656	ASPDH	0.708535	2.795180e-17	4.843209e-13	1.126328e-14
44	8003656	7929932	NM_030929	KAZALD1	0.708139	2.963959e-17	5.135652e-13	1.167194e-14
45	8003656	8110237	NM_133369	UNC5A	0.708029	3.012195e-17	5.219230e-13	1.159829e-14
46	8003656	7913450	NM_005529	HSPG2	0.706753	3.634512e-17	6.297519e-13	1.369026e-14
47	8003656	8125843	NM_012391	SPDEF	0.706472	3.787443e-17	6.562503e-13	1.396277e-14
48	8003656	7949796	NM_206997	GPR152	0.706294	3.887720e-17	6.736252e-13	1.403386e-14
49	8003656	7996281	NM_001136106	BEAN	0.705458	4.393476e-17	7.612575e-13	1.553587e-14
50	8003656	8075005	AK289871	ADORA2A	0.704644	4.947345e-17	8.572265e-13	1.714453e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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