[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7044	8029814	NM_006247	PPP5C		protein phosphatase 5, catalytic subunit

Fetching correlation data, please wait...
Getting list of correlations for id 7044.
Getting list of p-values for id 7044.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8029814	8129937	NM_006079	CITED2	0.568300	2.559028e-10	4.434028e-6	4.434028e-6
2	8029814	8034043	NM_030760	S1PR5	0.565657	3.226988e-10	5.591402e-6	2.795701e-6
3	8029814	8117377	NM_005321	HIST1H1E	0.546758	1.598535e-9	2.769782e-5	9.232608e-6
4	8029814	7945377	NM_001135053	SIGIRR	0.543431	2.097067e-9	3.633588e-5	9.083969e-6
5	8029814	8043725	NM_001079	ZAP70	0.543306	2.118516e-9	3.670752e-5	7.341505e-6
6	8029814	7913805	NM_001031680	RUNX3	0.543230	2.131518e-9	3.693281e-5	6.155468e-6
7	8029814	8038809	NM_005601	NKG7	0.540839	2.585934e-9	4.480647e-5	6.400925e-6
8	8029814	8008029	NM_013351	TBX21	0.540352	2.689151e-9	4.659492e-5	5.824365e-6
9	8029814	8085946	NM_005442	EOMES	0.538877	3.026592e-9	5.244175e-5	5.826862e-6
10	8029814	8132964	NM_015411	SUMF2	0.535826	3.858057e-9	6.684856e-5	6.684856e-6
11	8029814	7967202	NM_019034	RHOF	0.534481	4.290820e-9	7.434703e-5	6.758821e-6
12	8029814	7996081	NM_201524	GPR56	0.530476	5.871392e-9	1.017336e-4	8.477801e-6
13	8029814	8023377	NM_016626	MEX3C	0.516667	1.679085e-8	2.909351e-4	2.237962e-5
14	8029814	7945831	NM_020896	OSBPL5	0.515752	1.797306e-8	3.114192e-4	2.224423e-5
15	8029814	7921144	NM_001161441	SH2D2A	0.515093	1.887284e-8	3.270097e-4	2.180064e-5
16	8029814	7941444	NM_001335	CTSW	0.510319	2.679961e-8	4.643569e-4	2.902230e-5
17	8029814	8074780	NM_013313	YPEL1	0.507610	3.262323e-8	5.652627e-4	3.325075e-5
18	8029814	8055130	NM_004807	HS6ST1	0.501573	5.025941e-8	8.708448e-4	4.838027e-5
19	8029814	8032682	NM_139355	MATK	0.501379	5.095376e-8	8.828759e-4	4.646715e-5
20	8029814	7952145	NM_006389	HYOU1	0.501073	5.206836e-8	9.021885e-4	4.510943e-5
21	8029814	8126371	NM_001760	CCND3	0.498033	6.450425e-8	1.117665e-3	5.322215e-5
22	8029814	7905831	NM_025207	FLAD1	0.494673	8.152501e-8	1.412584e-3	6.420836e-5
23	8029814	8087640	NM_007182	RASSF1	0.494504	8.248718e-8	1.429255e-3	6.214154e-5
24	8029814	7968890	NM_003646	DGKZ	0.493842	8.635424e-8	1.496260e-3	6.234416e-5
25	8029814	7949792	NM_005608	PTPRCAP	0.492529	9.454449e-8	1.638172e-3	6.552690e-5
26	8029814	8068898	NM_080593	HIST1H2BK	0.489808	1.139437e-7	1.974303e-3	7.593471e-5
27	8029814	8014316	NM_002985	CCL5	0.489151	1.191630e-7	2.064737e-3	7.647176e-5
28	8029814	8003283	NM_017566	KLHDC4	0.488682	1.230275e-7	2.131697e-3	7.613203e-5
29	8029814	8005171	NM_016113	TRPV2	0.487696	1.315468e-7	2.279312e-3	7.859696e-5
30	8029814	8178939	NM_005452	WDR46	0.486520	1.424539e-7	2.468299e-3	8.227662e-5
31	8029814	8125671	NM_005452	WDR46	0.486520	1.424539e-7	2.468299e-3	7.962254e-5
32	8029814	8053584	NR_027353	CD8A	0.483714	1.720444e-7	2.981014e-3	9.315668e-5
33	8029814	8019376	NM_022156	DUS1L	0.482750	1.834968e-7	3.179450e-3	9.634696e-5
34	8029814	8179884	NM_006709	EHMT2	0.480026	2.199210e-7	3.810572e-3	1.120756e-4
35	8029814	8125172	NM_006709	EHMT2	0.480026	2.199210e-7	3.810572e-3	1.088735e-4
36	8029814	8037847	NM_004069	AP2S1	0.479867	2.222360e-7	3.850683e-3	1.069634e-4
37	8029814	8030035	NM_031485	GRWD1	0.479840	2.226400e-7	3.857683e-3	1.042617e-4
38	8029814	8000869	NM_052838	SEPT1	0.479446	2.285065e-7	3.959331e-3	1.041929e-4
39	8029814	8036525	NM_001042600	MAP4K1	0.479371	2.296428e-7	3.979020e-3	1.020262e-4
40	8029814	8063893	NM_007002	ADRM1	0.478841	2.378184e-7	4.120679e-3	1.030170e-4
41	8029814	8019263	NM_004309	ARHGDIA	0.477601	2.580362e-7	4.470994e-3	1.090486e-4
42	8029814	7934161	NM_005041	PRF1	0.477013	2.681900e-7	4.646927e-3	1.106411e-4
43	8029814	8075406	NM_014303	PES1	0.475654	2.931237e-7	5.078955e-3	1.181152e-4
44	8029814	8032755	NM_015898	ZBTB7A	0.473459	3.381087e-7	5.858410e-3	1.331457e-4
45	8029814	7906995	NM_012474	UCK2	0.472980	3.487457e-7	6.042717e-3	1.342826e-4
46	8029814	8032576	NM_198969	AES	0.472925	3.499839e-7	6.064172e-3	1.318298e-4
47	8029814	8019273	NM_005782	THOC4	0.472808	3.526615e-7	6.110566e-3	1.300120e-4
48	8029814	8046518	ENST00000364555		0.472271	3.651046e-7	6.326168e-3	1.317952e-4
49	8029814	8027398	NM_024310	PLEKHF1	0.472163	3.676606e-7	6.370455e-3	1.300093e-4
50	8029814	8023344	NM_001101654	CXXC1	0.471484	3.841113e-7	6.655496e-3	1.331099e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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