[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3110	8168790	NM_021637	TMEM35		transmembrane protein 35

Fetching correlation data, please wait...
Getting list of correlations for id 3110.
Getting list of p-values for id 3110.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8168790	7932186	NM_001033858	DCLRE1C	-0.655369	3.307202e-14	5.730389e-10	5.730389e-10
2	8168790	8130859	NM_214462	DACT2	0.609250	5.331524e-12	9.237931e-8	4.618966e-8
3	8168790	8046542	NM_014213	HOXD9	0.608049	6.019734e-12	1.043039e-7	3.476798e-8
4	8168790	7898616	NM_022819	PLA2G2F	0.607640	6.273511e-12	1.087011e-7	2.717528e-8
5	8168790	7988987	NM_004498	ONECUT1	0.607601	6.297951e-12	1.091246e-7	2.182492e-8
6	8168790	8155083	NM_001216	CA9	0.600519	1.274607e-11	2.208512e-7	3.680853e-8
7	8168790	8090639	NM_014602	PIK3R4	-0.596609	1.867340e-11	3.235541e-7	4.622201e-8
8	8168790	8045846	ENST00000363537		-0.594649	2.256799e-11	3.910355e-7	4.887944e-8
9	8168790	7914433	NM_001703	BAI2	0.592401	2.800433e-11	4.852310e-7	5.391456e-8
10	8168790	7953450	NM_014262	LEPREL2	0.592275	2.834402e-11	4.911168e-7	4.911168e-8
11	8168790	8146643	hsa-mir-124-2		0.589297	3.761841e-11	6.518142e-7	5.925584e-8
12	8168790	8076393	NM_024053	CENPM	0.588210	4.168736e-11	7.223168e-7	6.019307e-8
13	8168790	8037728	NM_001012643	MYPOP	0.588198	4.173569e-11	7.231543e-7	5.562726e-8
14	8168790	7998629	ENST00000431136		0.585854	5.200611e-11	9.011098e-7	6.436499e-8
15	8168790	8044548	NM_014440	IL1F6	0.584660	5.813309e-11	1.007272e-6	6.715147e-8
16	8168790	8064108	BC000912	C20orf195	0.583223	6.643311e-11	1.151087e-6	7.194291e-8
17	8168790	8178442	NM_001264	CDSN	0.581562	7.746037e-11	1.342156e-6	7.895035e-8
18	8168790	8079532	NM_015466	PTPN23	0.581367	7.885862e-11	1.366383e-6	7.591018e-8
19	8168790	8104253	NM_033120	NKD2	0.580110	8.852016e-11	1.533789e-6	8.072572e-8
20	8168790	7928872	NM_003087	SNCG	0.578431	1.032073e-10	1.788274e-6	8.941368e-8
21	8168790	7983663	NM_005154	USP8	-0.576010	1.285811e-10	2.227925e-6	1.060917e-7
22	8168790	8159624	BC052297	C9orf169	0.573366	1.631378e-10	2.826689e-6	1.284859e-7
23	8168790	8059028	NM_194302	CCDC108	0.573274	1.644859e-10	2.850047e-6	1.239151e-7
24	8168790	8086810	NM_003074	SMARCC1	-0.573087	1.672700e-10	2.898288e-6	1.207620e-7
25	8168790	8159670	NM_006647	NOXA1	0.572759	1.722421e-10	2.984439e-6	1.193775e-7
26	8168790	7898431	NM_016233	PADI3	0.572694	1.732440e-10	3.001799e-6	1.154538e-7
27	8168790	8001014	NM_173502	PRSS36	0.572573	1.751418e-10	3.034682e-6	1.123956e-7
28	8168790	8058997	NM_017431	PRKAG3	0.572228	1.806104e-10	3.129437e-6	1.117656e-7
29	8168790	8134907	NM_000799	EPO	0.571446	1.936554e-10	3.355467e-6	1.157057e-7
30	8168790	7908694	NM_020443	NAV1	0.570624	2.083537e-10	3.610145e-6	1.203382e-7
31	8168790	8048272	BC052750	C2orf62	0.569043	2.396688e-10	4.152741e-6	1.339594e-7
32	8168790	8024605	NM_021938	CELF5	0.568696	2.471296e-10	4.282015e-6	1.338130e-7
33	8168790	7931764	NM_018702	ADARB2	0.568683	2.474030e-10	4.286752e-6	1.299016e-7
34	8168790	8054872	NM_014553	TFCP2L1	0.568592	2.494019e-10	4.321387e-6	1.270996e-7
35	8168790	8010071	NM_001088	AANAT	0.567725	2.691866e-10	4.664195e-6	1.332627e-7
36	8168790	8144703			0.567716	2.694134e-10	4.668127e-6	1.296702e-7
37	8168790	8179716	NM_001264	CDSN	0.567670	2.704904e-10	4.686788e-6	1.266699e-7
38	8168790	7910618	NM_173508	SLC35F3	0.567532	2.737965e-10	4.744072e-6	1.248440e-7
39	8168790	8067652	NM_001958	EEF1A2	0.566937	2.884820e-10	4.998528e-6	1.281674e-7
40	8168790	7952350	NM_018400	SCN3B	0.566357	3.035312e-10	5.259285e-6	1.314821e-7
41	8168790	8092978	NM_018406	MUC4	0.566107	3.102348e-10	5.375439e-6	1.311083e-7
42	8168790	7980889	ENST00000363172		0.566031	3.123101e-10	5.411398e-6	1.288428e-7
43	8168790	8028407	NM_000540	RYR1	0.563361	3.940581e-10	6.827845e-6	1.587871e-7
44	8168790	7985920	NM_001039958	MESP2	0.563149	4.013569e-10	6.954311e-6	1.580525e-7
45	8168790	7912629	NM_201628	KAZ	0.562693	4.175190e-10	7.234352e-6	1.607634e-7
46	8168790	7991893	BC016613	C16orf11	0.561724	4.539478e-10	7.865554e-6	1.709903e-7
47	8168790	7960464	NM_000552	VWF	0.561332	4.695548e-10	8.135975e-6	1.731059e-7
48	8168790	8032023	NM_016585	THEG	0.561238	4.733613e-10	8.201931e-6	1.708736e-7
49	8168790	8049187	NM_025202	EFHD1	0.561135	4.775803e-10	8.275035e-6	1.688783e-7
50	8168790	8064394	ENST00000217256		0.560964	4.846599e-10	8.397702e-6	1.679540e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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