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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
1066 7938295 NM_000990 RPL27A link to infopage ribosomal protein L27a
6821 7938286 NM_000990 RPL27A link to infopage ribosomal protein L27a

Fetching correlation data, please wait...
Getting list of correlations for id 1066.
Getting list of p-values for id 1066.
1 of 2 done.
Getting list of correlations for id 6821.
Getting list of p-values for id 6821.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.201 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7938286 8138531 NM_001402 EEF1A1 link to infopage 0.655605 3.215143e-14 1.114176e-9 1.114176e-9
2 7938286 8158952 NM_001402 EEF1A1 link to infopage 0.653262 4.252396e-14 1.473625e-9 7.368126e-10
3 7938286 8160308 NM_001010 RPS6 link to infopage 0.635839 3.158549e-13 1.094564e-8 3.648545e-9
4 7938286 8090678 NM_007208 MRPL3 link to infopage 0.632469 4.587804e-13 1.589858e-8 3.974644e-9
5 7938286 8048195 NM_000998 RPL37A link to infopage 0.626444 8.841572e-13 3.063958e-8 6.127917e-9
6 7938295 7948399 NM_152716 PATL1 link to infopage -0.601394 1.169318e-11 4.052155e-7 6.753592e-8
7 7938286 8168416 NM_032747 USMG5 link to infopage 0.599497 1.409128e-11 4.883191e-7 6.975988e-8
8 7938286 8001496 NM_007006 NUDT21 link to infopage 0.598005 1.630253e-11 5.649480e-7 7.061850e-8
9 7938286 8179326 NM_001040437 C6orf48 link to infopage 0.595405 2.098100e-11 7.270755e-7 8.078617e-8
10 7938286 8178090 NM_001040437 C6orf48 link to infopage 0.595405 2.098100e-11 7.270755e-7 7.270755e-8
11 7938286 8109750 NM_001002 RPLP0 link to infopage 0.593996 2.403348e-11 8.328561e-7 7.571419e-8
12 7938286 8130403 ENST00000406898 link to infopage 0.593076 2.625131e-11 9.097128e-7 7.580940e-8
13 7938286 7903183 ENST00000415278 link to infopage 0.589246 3.780169e-11 1.309980e-6 1.007677e-7
14 7938286 8137240 NM_153236 GIMAP7 link to infopage 0.588978 3.877241e-11 1.343619e-6 9.597279e-8
15 7938286 7927972 NM_004896 VPS26A link to infopage 0.588402 4.093768e-11 1.418654e-6 9.457695e-8
16 7938286 7950654 NM_024079 ALG8 link to infopage 0.588102 4.211205e-11 1.459351e-6 9.120943e-8
17 7938286 8138128 NM_015622 CCZ1 link to infopage 0.587249 4.563114e-11 1.581301e-6 9.301773e-8
18 7938286 7942586 NM_001005 RPS3 link to infopage 0.586279 4.997564e-11 1.731856e-6 9.621420e-8
19 7938286 7999827 NM_001019 RPS15A link to infopage 0.583953 6.208389e-11 2.151455e-6 1.132345e-7
20 7938286 7948679 NM_001404 EEF1G link to infopage 0.583822 6.284428e-11 2.177806e-6 1.088903e-7
21 7938286 8097782 NM_001006 RPS3A link to infopage 0.583415 6.526689e-11 2.261759e-6 1.077028e-7
22 7938286 7903582 NM_001035006 RPL17 link to infopage 0.581920 7.494186e-11 2.597035e-6 1.180471e-7
23 7938286 8036777 NM_001436 FBL link to infopage 0.580576 8.480836e-11 2.938949e-6 1.277804e-7
24 7938295 7983922 link to infopage -0.579762 9.138514e-11 3.166861e-6 1.319525e-7
25 7938286 8103222 GENSCAN00000040988 link to infopage 0.579278 9.552425e-11 3.310297e-6 1.324119e-7
26 7938286 8131356 NM_015622 CCZ1 link to infopage 0.579199 9.621591e-11 3.334266e-6 1.282410e-7
27 7938286 8078905 NM_002295 RPSA link to infopage 0.579035 9.766613e-11 3.384522e-6 1.253527e-7
28 7938286 8141222 NM_001006 RPS3A link to infopage 0.578486 1.026835e-10 3.558395e-6 1.270855e-7
29 7938295 8168892 NM_080390 TCEAL2 link to infopage 0.577765 1.096582e-10 3.800094e-6 1.310377e-7
30 7938286 8141050 NM_001006 RPS3A link to infopage 0.577169 1.157608e-10 4.011573e-6 1.337191e-7
31 7938286 8084694 NM_001967 EIF4A2 link to infopage 0.576098 1.275611e-10 4.420503e-6 1.425969e-7
32 7938286 7918050 NM_002295 RPSA link to infopage 0.575520 1.344034e-10 4.657615e-6 1.455505e-7
33 7938286 7954021 NM_001310 CREBL2 link to infopage 0.573282 1.643739e-10 5.696214e-6 1.726125e-7
34 7938286 8042052 NM_002954 RPS27A link to infopage 0.572023 1.839526e-10 6.374692e-6 1.874909e-7
35 7938286 8070655 NM_001025204 U2AF1 link to infopage 0.571383 1.947557e-10 6.749065e-6 1.928304e-7
36 7938286 7908407 NM_002954 RPS27A link to infopage 0.571071 2.002427e-10 6.939211e-6 1.927559e-7
37 7938286 7907124 NM_152902 TIPRL link to infopage 0.570389 2.127457e-10 7.372488e-6 1.992564e-7
38 7938295 8000482 NM_015171 XPO6 link to infopage -0.570354 2.133965e-10 7.395042e-6 1.946064e-7
39 7938286 8151935 NM_000989 RPL30 link to infopage 0.569676 2.266167e-10 7.853175e-6 2.013635e-7
40 7938295 8073214 NM_001024843 TNRC6B link to infopage -0.568472 2.520657e-10 8.735085e-6 2.183771e-7
41 7938286 7944216 NM_006476 ATP5L link to infopage 0.568171 2.588439e-10 8.969975e-6 2.187799e-7
42 7938286 7943162 BC012298 C11orf54 link to infopage 0.567225 2.812983e-10 9.748110e-6 2.320979e-7
43 7938286 7966534 NM_001024662 RPL6 link to infopage 0.566938 2.884651e-10 9.996468e-6 2.324760e-7
44 7938286 8022170 NM_001024662 RPL6 link to infopage 0.565211 3.355156e-10 1.162696e-5 2.642490e-7
45 7938295 8144448 NM_018088 FAM90A1 link to infopage 0.565160 3.369988e-10 1.167836e-5 2.595191e-7
46 7938295 7993019 NM_032349 NUDT16L1 link to infopage 0.564456 3.582974e-10 1.241644e-5 2.699226e-7
47 7938295 7908409 NM_002923 RGS2 link to infopage -0.562268 4.331483e-10 1.501032e-5 3.193685e-7
48 7938286 7936091 NM_032747 USMG5 link to infopage 0.561850 4.490573e-10 1.556163e-5 3.242007e-7
49 7938295 7940667 NR_004390 SNORA57 link to infopage 0.561739 4.533497e-10 1.571038e-5 3.206200e-7
50 7938286 8138670 NM_031243 HNRNPA2B1 link to infopage 0.561290 4.712604e-10 1.633106e-5 3.266211e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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