[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6470	7954717	NM_001714	BICD1		bicaudal D homolog 1 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 6470.
Getting list of p-values for id 6470.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.100 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7954717	8078729	NM_002468	MYD88	-0.510419	2.660617e-8	4.610052e-4	4.610052e-4
2	7954717	7984217	NM_025201	PLEKHO2	-0.464171	6.118544e-7	1.060160e-2	5.300800e-3
3	7954717	8136388	NM_018295	TMEM140	-0.462215	6.917758e-7	1.198640e-2	3.995466e-3
4	7954717	8072735	NM_145343	APOL1	-0.456940	9.594579e-7	1.662453e-2	4.156132e-3
5	7954717	8157270	NM_001859	SLC31A1	-0.451875	1.306887e-6	2.264443e-2	4.528886e-3
6	7954717	8016982	NM_003168	SUPT4H1	-0.451305	1.352729e-6	2.343874e-2	3.906457e-3
7	7954717	8075720	NM_030882	APOL2	-0.448052	1.644829e-6	2.849995e-2	4.071421e-3
8	7954717	7923662	NM_002646	PIK3C2B	0.447255	1.724965e-6	2.988847e-2	3.736058e-3
9	7954717	8125500	NM_004159	PSMB8	-0.445580	1.905751e-6	3.302095e-2	3.668995e-3
10	7954717	8178855	NM_004159	PSMB8	-0.445580	1.905751e-6	3.302095e-2	3.302095e-3
11	7954717	8180049	NM_004159	PSMB8	-0.445580	1.905751e-6	3.302095e-2	3.001905e-3
12	7954717	8058855	ENST00000457237		-0.444519	2.029263e-6	3.516104e-2	2.930086e-3
13	7954717	7939150	NM_024081	PRRG4	-0.442010	2.352380e-6	4.075969e-2	3.135360e-3
14	7954717	7945962	NM_003141	TRIM21	-0.439461	2.730130e-6	4.730496e-2	3.378926e-3
15	7954717	7995697	NM_017839	LPCAT2	-0.438870	2.825589e-6	4.895898e-2	3.263932e-3
16	7954717	8072710	NM_030641	APOL6	-0.438827	2.832729e-6	4.908270e-2	3.067669e-3
17	7954717	8092169	NM_003810	TNFSF10	-0.438638	2.863941e-6	4.962350e-2	2.919030e-3
18	7954717	8000706	NM_006319	CDIPT	-0.435422	3.448339e-6	5.974938e-2	3.319410e-3
19	7954717	8178841	NM_018833	TAP2	-0.435092	3.514212e-6	6.089076e-2	3.204777e-3
20	7954717	8180034	NM_000544	TAP2	-0.435010	3.530812e-6	6.117838e-2	3.058919e-3
21	7954717	7951385	NM_004347	CASP5	-0.434818	3.569962e-6	6.185673e-2	2.945559e-3
22	7954717	7966315	NM_005719	ARPC3	-0.434075	3.725119e-6	6.454513e-2	2.933870e-3
23	7954717	7905047	NM_000566	FCGR1A	-0.433232	3.908875e-6	6.772907e-2	2.944742e-3
24	7954717	8179495	NM_002800	PSMB9	-0.431747	4.253417e-6	7.369896e-2	3.070790e-3
25	7954717	8178211	NM_002800	PSMB9	-0.431747	4.253417e-6	7.369896e-2	2.947958e-3
26	7954717	8118571	NM_002800	PSMB9	-0.431747	4.253417e-6	7.369896e-2	2.834575e-3
27	7954717	8020110	NM_006868	RAB31	-0.430900	4.462804e-6	7.732700e-2	2.863963e-3
28	7954717	7977046	NM_006291	TNFAIP2	-0.429346	4.872201e-6	8.442063e-2	3.015022e-3
29	7954717	7917532	NM_004120	GBP2	-0.429251	4.898241e-6	8.487183e-2	2.926615e-3
30	7954717	8002041	NM_004691	ATP6V0D1	-0.428954	4.980830e-6	8.630284e-2	2.876761e-3
31	7954717	8103911	NM_002199	IRF2	-0.428689	5.055757e-6	8.760110e-2	2.825842e-3
32	7954717	8027862	NM_005306	FFAR2	-0.426980	5.564305e-6	9.641271e-2	3.012897e-3
33	7954717	8074261	NM_197966	BID	-0.425767	5.954004e-6	1.031650e-1	3.126213e-3
34	7954717	8000184	NM_005849	IGSF6	-0.425639	5.996679e-6	1.039045e-1	3.056013e-3
35	7954717	8094830	NM_018126	TMEM33	-0.425527	6.033906e-6	1.045495e-1	2.987128e-3
36	7954717	7961440	NM_024829	PLBD1	-0.423953	6.585027e-6	1.140988e-1	3.169410e-3
37	7954717	8125483	NM_000544	TAP2	-0.422600	7.096445e-6	1.229601e-1	3.323246e-3
38	7954717	8019486	NM_003004	SECTM1	-0.421379	7.589723e-6	1.315071e-1	3.460714e-3
39	7954717	8117372	NM_003512	HIST1H2AC	-0.421152	7.684744e-6	1.331536e-1	3.414194e-3
40	7954717	7936661	NM_006793	PRDX3	-0.420787	7.840492e-6	1.358522e-1	3.396305e-3
41	7954717	8133625	NM_198924	TRIM73	0.420139	8.123773e-6	1.407606e-1	3.433186e-3
42	7954717	8117081	NM_153042	KDM1B	-0.419805	8.273479e-6	1.433546e-1	3.413204e-3
43	7954717	8009502	NM_000891	KCNJ2	-0.419374	8.470409e-6	1.467668e-1	3.413181e-3
44	7954717	7917516	NM_002053	GBP1	-0.419195	8.553640e-6	1.482089e-1	3.368384e-3
45	7954717	8130499	NM_006519	DYNLT1	-0.418801	8.739117e-6	1.514227e-1	3.364948e-3
46	7954717	8121257	NM_001198	PRDM1	-0.417386	9.438059e-6	1.635333e-1	3.555071e-3
47	7954717	8121588	NM_013352	DSE	-0.417085	9.593564e-6	1.662277e-1	3.536759e-3
48	7954717	8026971	NM_006332	IFI30	-0.415450	1.047957e-5	1.815795e-1	3.782905e-3
49	7954717	8122457	NM_003764	STX11	-0.414353	1.111716e-5	1.926270e-1	3.931164e-3
50	7954717	8045688	NM_007115	TNFAIP6	-0.413602	1.157421e-5	2.005463e-1	4.010926e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation