[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5012	7936011	NM_024040	CUEDC2		CUE domain containing 2

Fetching correlation data, please wait...
Getting list of correlations for id 5012.
Getting list of p-values for id 5012.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.107 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7936011	8019296	NM_016538	SIRT7	0.600093	1.329071e-11	2.302882e-7	2.302882e-7
2	7936011	8042859	NM_031288	INO80B	0.558289	6.093818e-10	1.055876e-5	5.279380e-6
3	7936011	7975602	NM_006821	ACOT2	0.537559	3.362210e-9	5.825701e-5	1.941900e-5
4	7936011	7896754	AK290103	LOC100287934	-0.530011	6.087732e-9	1.054821e-4	2.637053e-5
5	7936011	8099029	NM_024309	TNIP2	0.520606	1.250196e-8	2.166214e-4	4.332428e-5
6	7936011	7941900	NM_003952	RPS6KB2	0.514000	2.045952e-8	3.545022e-4	5.908369e-5
7	7936011	8027139	NM_003721	RFXANK	0.510019	2.739344e-8	4.746462e-4	6.780659e-5
8	7936011	7909990	AK290103	LOC100287934	-0.504515	4.075753e-8	7.062058e-4	8.827572e-5
9	7936011	8027352			-0.503832	4.279787e-8	7.415586e-4	8.239540e-5
10	7936011	8034448	NM_016145	C19orf56	0.502267	4.784175e-8	8.289541e-4	8.289541e-5
11	7936011	7992255	NM_032520	GNPTG	0.497937	6.493861e-8	1.125191e-3	1.022901e-4
12	7936011	7986160	NM_001039675	UNC45A	0.497419	6.733768e-8	1.166760e-3	9.723001e-5
13	7936011	7949776	NM_020441	CORO1B	0.496920	6.972719e-8	1.208163e-3	9.293562e-5
14	7936011	8043657	NM_020184	CNNM4	0.494591	8.199143e-8	1.420665e-3	1.014761e-4
15	7936011	8033069	NM_175614	NDUFA11	0.491412	1.020969e-7	1.769033e-3	1.179356e-4
16	7936011	7991989	NM_138769	RHOT2	0.491261	1.031563e-7	1.787389e-3	1.117118e-4
17	7936011	8159654	NM_015456	COBRA1	0.489057	1.199301e-7	2.078030e-3	1.222370e-4
18	7936011	7897849	NM_021933	MIIP	0.486185	1.457091e-7	2.524701e-3	1.402612e-4
19	7936011	7905831	NM_025207	FLAD1	0.485695	1.506014e-7	2.609470e-3	1.373405e-4
20	7936011	8159541	BC002613	C9orf142	0.483858	1.703902e-7	2.952350e-3	1.476175e-4
21	7936011	8027006	NM_032627	SSBP4	0.483279	1.771223e-7	3.068997e-3	1.461427e-4
22	7936011	8172453	NM_005834	TIMM17B	0.480868	2.079800e-7	3.603670e-3	1.638032e-4
23	7936011	8167040	NR_000041	RNU12-2P	0.476555	2.763612e-7	4.788511e-3	2.081961e-4
24	7936011	8158492	BC009114	FAM73B	0.474854	3.088034e-7	5.350637e-3	2.229432e-4
25	7936011	8167457	NM_014008	CCDC22	0.472878	3.510572e-7	6.082768e-3	2.433107e-4
26	7936011	7956200	NM_002475	MYL6B	0.471786	3.767117e-7	6.527283e-3	2.510494e-4
27	7936011	7999160	NM_013399	C16orf5	0.471599	3.812676e-7	6.606224e-3	2.446750e-4
28	7936011	8170955	NM_001099857	IKBKG	0.471279	3.892251e-7	6.744102e-3	2.408608e-4
29	7936011	8028930	NM_016154	RAB4B	0.469945	4.240359e-7	7.347270e-3	2.533541e-4
30	7936011	8010499	AK096344	FLJ35220	0.469663	4.317799e-7	7.481451e-3	2.493817e-4
31	7936011	7897745	NM_020350	AGTRAP	0.468686	4.595899e-7	7.963315e-3	2.568811e-4
32	7936011	7950235	NM_006645	STARD10	0.468053	4.785431e-7	8.291716e-3	2.591161e-4
33	7936011	7897293			0.467746	4.879839e-7	8.455297e-3	2.562211e-4
34	7936011	8159566	NM_016219	MAN1B1	0.466721	5.208041e-7	9.023972e-3	2.654109e-4
35	7936011	8033465	NM_006351	TIMM44	0.465131	5.759597e-7	9.979653e-3	2.851330e-4
36	7936011	8087640	NM_007182	RASSF1	0.464660	5.933140e-7	1.028035e-2	2.855653e-4
37	7936011	8062377	NM_005417	SRC	0.463872	6.234993e-7	1.080337e-2	2.919830e-4
38	7936011	8032009	NM_017550	MIER2	0.459344	8.271192e-7	1.433149e-2	3.771446e-4
39	7936011	7992043	BC001181	FAM173A	0.458768	8.571754e-7	1.485228e-2	3.808276e-4
40	7936011	7945730	NM_005170	ASCL2	0.456148	1.007320e-6	1.745383e-2	4.363457e-4
41	7936011	7949518	NM_198897	FIBP	0.455245	1.064571e-6	1.844581e-2	4.498979e-4
42	7936011	8146906			0.454584	1.108468e-6	1.920642e-2	4.572958e-4
43	7936011	7987454	NM_001003940	BMF	0.454512	1.113347e-6	1.929096e-2	4.486271e-4
44	7936011	8053406	NM_017750	RETSAT	0.454447	1.117759e-6	1.936741e-2	4.401684e-4
45	7936011	8037071	NM_006423	RABAC1	0.454132	1.139492e-6	1.974397e-2	4.387549e-4
46	7936011	8062206	NM_080748	ROMO1	0.451793	1.313399e-6	2.275727e-2	4.947233e-4
47	7936011	7977409	NM_001311	CRIP1	0.451191	1.362075e-6	2.360067e-2	5.021420e-4
48	7936011	7941350	NM_032223	PCNXL3	0.451070	1.372027e-6	2.377311e-2	4.952732e-4
49	7936011	8179364	NM_006929	SKIV2L	0.450961	1.381095e-6	2.393023e-2	4.883720e-4
50	7936011	8013500	NM_003876	TMEM11	0.449740	1.486532e-6	2.575713e-2	5.151427e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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