[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3825	7914282	NM_014654	SDC3		syndecan 3

Fetching correlation data, please wait...
Getting list of correlations for id 3825.
Getting list of p-values for id 3825.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7914282	8115524	NM_014666	CLINT1	-0.745428	7.515855e-20	1.302272e-15	1.302272e-15
2	7914282	8102695			0.734499	4.807312e-19	8.329630e-15	4.164815e-15
3	7914282	7936762	NM_001001976	ATE1	-0.733534	5.637774e-19	9.768571e-15	3.256190e-15
4	7914282	8108453	NM_032289	PSD2	0.732377	6.820114e-19	1.181721e-14	2.954303e-15
5	7914282	8072316	NM_001017437	CCDC157	0.731409	7.990788e-19	1.384564e-14	2.769128e-15
6	7914282	7913450	NM_005529	HSPG2	0.729580	1.075990e-18	1.864368e-14	3.107280e-15
7	7914282	8008723	NM_000502	EPX	0.729414	1.105178e-18	1.914942e-14	2.735631e-15
8	7914282	7937560	NM_002457	MUC2	0.728830	1.214699e-18	2.104709e-14	2.630886e-15
9	7914282	8018379	NM_020753	CASKIN2	0.728734	1.233544e-18	2.137361e-14	2.374845e-15
10	7914282	7896798	NM_032129	PLEKHN1	0.728565	1.267700e-18	2.196543e-14	2.196543e-15
11	7914282	8090639	NM_014602	PIK3R4	-0.726753	1.695906e-18	2.938496e-14	2.671360e-15
12	7914282	7909642	NM_024749	VASH2	0.724942	2.263170e-18	3.921395e-14	3.267829e-15
13	7914282	7949227	NM_017525	CDC42BPG	0.723135	3.011506e-18	5.218036e-14	4.013874e-15
14	7914282	7946860	NM_000352	ABCC8	0.721455	3.919852e-18	6.791927e-14	4.851376e-15
15	7914282	7936144	NM_000494	COL17A1	0.720991	4.214063e-18	7.301707e-14	4.867805e-15
16	7914282	8001014	NM_173502	PRSS36	0.719336	5.451124e-18	9.445163e-14	5.903227e-15
17	7914282	7947991	NM_015231	NUP160	-0.719143	5.616046e-18	9.730924e-14	5.724073e-15
18	7914282	8046922	NM_000090	COL3A1	0.719018	5.725519e-18	9.920606e-14	5.511448e-15
19	7914282	8043114	NM_031283	TCF7L1	0.717529	7.203231e-18	1.248104e-13	6.568968e-15
20	7914282	8096556	NM_015143	METAP1	-0.716542	8.380958e-18	1.452169e-13	7.260843e-15
21	7914282	7937200	NM_015722	CALY	0.714877	1.080219e-17	1.871696e-13	8.912837e-15
22	7914282	8034469	NM_032301	FBXW9	0.713310	1.369498e-17	2.372929e-13	1.078604e-14
23	7914282	8042537	NM_001692	ATP6V1B1	0.712782	1.482941e-17	2.569493e-13	1.117171e-14
24	7914282	7955305	NM_001652	AQP6	0.711481	1.803133e-17	3.124288e-13	1.301787e-14
25	7914282	8013384	NM_000691	ALDH3A1	0.711328	1.844763e-17	3.196421e-13	1.278568e-14
26	7914282	8024373	NM_001039846	IZUMO4	0.710270	2.160629e-17	3.743722e-13	1.439893e-14
27	7914282	7942123	NM_053056	CCND1	0.710120	2.209224e-17	3.827922e-13	1.417749e-14
28	7914282	8153101	NM_152888	COL22A1	0.710109	2.213024e-17	3.834507e-13	1.369467e-14
29	7914282	8059028	NM_194302	CCDC108	0.709740	2.337907e-17	4.050891e-13	1.396859e-14
30	7914282	8036072	NM_207392	KRTDAP	0.709117	2.564437e-17	4.443399e-13	1.481133e-14
31	7914282	7898616	NM_022819	PLA2G2F	0.708665	2.741927e-17	4.750936e-13	1.532560e-14
32	7914282	8086810	NM_003074	SMARCC1	-0.708368	2.865287e-17	4.964683e-13	1.551463e-14
33	7914282	7940377	NM_017870	TMEM132A	0.708325	2.883352e-17	4.995984e-13	1.513935e-14
34	7914282	8064111	NM_032957	RTEL1	0.708184	2.944195e-17	5.101407e-13	1.500414e-14
35	7914282	7914667	NM_052896	CSMD2	0.707946	3.049599e-17	5.284041e-13	1.509726e-14
36	7914282	8092978	NM_018406	MUC4	0.707587	3.215150e-17	5.570891e-13	1.547470e-14
37	7914282	8137280	NM_000603	NOS3	0.706885	3.564989e-17	6.177056e-13	1.669474e-14
38	7914282	8004802	NM_017622	C17orf59	0.706606	3.714035e-17	6.435308e-13	1.693502e-14
39	7914282	8010071	NM_001088	AANAT	0.706466	3.790884e-17	6.568465e-13	1.684222e-14
40	7914282	7970262	NM_001008895	CUL4A	-0.706383	3.837268e-17	6.648835e-13	1.662209e-14
41	7914282	7931439	NM_006426	DPYSL4	0.706047	4.031030e-17	6.984565e-13	1.703552e-14
42	7914282	8028719	NM_016941	DLL3	0.705477	4.381074e-17	7.591087e-13	1.807402e-14
43	7914282	8148658	NM_014789	ZNF623	-0.703578	5.775166e-17	1.000663e-12	2.327123e-14
44	7914282	7923360	NM_003281	TNNI1	0.702720	6.537798e-17	1.132804e-12	2.574555e-14
45	7914282	7955184	NM_006262	PRPH	0.702503	6.746243e-17	1.168921e-12	2.597603e-14
46	7914282	8053842	NM_207328	GPAT2	0.700843	8.564533e-17	1.483977e-12	3.226036e-14
47	7914282	8038598	NM_016148	SHANK1	0.700779	8.642467e-17	1.497480e-12	3.186128e-14
48	7914282	8024605	NM_021938	CELF5	0.700628	8.831173e-17	1.530177e-12	3.187869e-14
49	7914282	8032051	NM_182577	ODF3L2	0.700108	9.512907e-17	1.648301e-12	3.363880e-14
50	7914282	8067820	BC024764	IQSEC3	0.700100	9.524026e-17	1.650228e-12	3.300456e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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