[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5882	8066200	BC013755	TTI1		Tel2 interacting protein 1 homolog (S. pombe)

Fetching correlation data, please wait...
Getting list of correlations for id 5882.
Getting list of p-values for id 5882.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8066200	8009205	NM_007372	DDX42	0.850535	1.651156e-30	2.860959e-26	2.860959e-26
2	8066200	8145636	NM_024567	HMBOX1	0.837602	8.386400e-29	1.453111e-24	7.265557e-25
3	8066200	8126121	NM_052893	BTBD9	0.825520	2.438630e-27	4.225413e-23	1.408471e-23
4	8066200	7930956	NM_007190	SEC23IP	0.824875	2.897588e-27	5.020650e-23	1.255163e-23
5	8066200	7916443	NM_015306	USP24	0.819555	1.171935e-26	2.030612e-22	4.061225e-23
6	8066200	8040985	NM_032434	ZNF512	0.818908	1.384518e-26	2.398954e-22	3.998256e-23
7	8066200	8001693	NM_016284	CNOT1	0.815571	3.238412e-26	5.611197e-22	8.015996e-23
8	8066200	7979849	NM_003861	DCAF5	0.813505	5.433735e-26	9.415032e-22	1.176879e-22
9	8066200	8054888	NM_015282	CLASP1	0.813063	6.065208e-26	1.050919e-21	1.167687e-22
10	8066200	7987840	NM_015289	VPS39	0.812842	6.407000e-26	1.110141e-21	1.110141e-22
11	8066200	8080645	NM_012096	APPL1	0.812583	6.831041e-26	1.183614e-21	1.076013e-22
12	8066200	8087951	NM_018165	PBRM1	0.812001	7.888225e-26	1.366793e-21	1.138994e-22
13	8066200	7972069	NM_015057	MYCBP2	0.810492	1.142602e-25	1.979787e-21	1.522913e-22
14	8066200	7944850	NM_032811	TBRG1	0.808945	1.665148e-25	2.885203e-21	2.060859e-22
15	8066200	8100251	NM_015030	FRYL	0.808303	1.944894e-25	3.369918e-21	2.246612e-22
16	8066200	8083282	NM_032383	HPS3	0.808079	2.052893e-25	3.557048e-21	2.223155e-22
17	8066200	8175393	NM_004840	ARHGEF6	0.808055	2.064887e-25	3.577830e-21	2.104606e-22
18	8066200	8081465	NM_001142568	BBX	0.805396	3.899442e-25	6.756563e-21	3.753646e-22
19	8066200	7987325	NM_014691	AQR	0.805047	4.236436e-25	7.340473e-21	3.863407e-22
20	8066200	8064351	NM_177559	CSNK2A1	0.803536	6.049011e-25	1.048112e-20	5.240561e-22
21	8066200	8099649	NM_001358	DHX15	0.803464	6.152982e-25	1.066127e-20	5.076796e-22
22	8066200	8101376	NM_014933	SEC31A	0.803189	6.562073e-25	1.137010e-20	5.168229e-22
23	8066200	8163275	NM_001080398	KIAA0368	0.802402	7.888107e-25	1.366772e-20	5.942488e-22
24	8066200	8068289	NM_138927	SON	0.801434	9.880424e-25	1.711981e-20	7.133254e-22
25	8066200	8101324	NM_031370	HNRNPD	0.800803	1.143594e-24	1.981505e-20	7.926022e-22
26	8066200	8023195	NM_005901	SMAD2	0.799907	1.406026e-24	2.436221e-20	9.370082e-22
27	8066200	8110169	NM_014613	FAF2	0.799112	1.687293e-24	2.923573e-20	1.082805e-21
28	8066200	8160622	NM_018225	SMU1	0.798687	1.859484e-24	3.221928e-20	1.150688e-21
29	8066200	7925978	NM_017782	C10orf18	0.798342	2.011668e-24	3.485617e-20	1.201937e-21
30	8066200	7994161	NM_006910	RBBP6	0.797416	2.483114e-24	4.302492e-20	1.434164e-21
31	8066200	8006638	NM_024835	GGNBP2	0.796694	2.924133e-24	5.066645e-20	1.634402e-21
32	8066200	8154333	NM_015061	KDM4C	0.795684	3.670772e-24	6.360347e-20	1.987608e-21
33	8066200	8132070	NM_002047	GARS	0.795372	3.937585e-24	6.822653e-20	2.067471e-21
34	8066200	8163023	NM_003640	IKBKAP	0.795285	4.014607e-24	6.956110e-20	2.045915e-21
35	8066200	8008213	NM_007067	MYST2	0.795195	4.096597e-24	7.098174e-20	2.028050e-21
36	8066200	7952557	NM_003139	SRPR	0.794848	4.426734e-24	7.670203e-20	2.130612e-21
37	8066200	7972190	NM_022118	RBM26	0.794528	4.755474e-24	8.239811e-20	2.226976e-21
38	8066200	8044745	NM_006773	DDX18	0.794415	4.876917e-24	8.450234e-20	2.223746e-21
39	8066200	8092849	NM_024524	ATP13A3	0.794301	5.002061e-24	8.667071e-20	2.222326e-21
40	8066200	8018922	NM_004762	CYTH1	0.794080	5.254222e-24	9.103991e-20	2.275998e-21
41	8066200	8017776	NM_014877	HELZ	0.793545	5.918048e-24	1.025420e-19	2.501025e-21
42	8066200	8123767	NM_003144	SSR1	0.793512	5.961324e-24	1.032919e-19	2.459330e-21
43	8066200	7913300	NM_016287	HP1BP3	0.793485	5.997046e-24	1.039108e-19	2.416531e-21
44	8066200	8066668	NM_020967	NCOA5	0.793375	6.145693e-24	1.064864e-19	2.420146e-21
45	8066200	7944285	NM_001655	ARCN1	0.792181	8.001248e-24	1.386376e-19	3.080836e-21
46	8066200	8116664	NM_003913	PRPF4B	0.790807	1.081897e-23	1.874603e-19	4.075224e-21
47	8066200	7955908	NM_005337	NCKAP1L	0.790366	1.191114e-23	2.063843e-19	4.391155e-21
48	8066200	7932000	NM_012311	KIN	0.789924	1.311468e-23	2.272381e-19	4.734127e-21
49	8066200	7924351	NM_004446	EPRS	0.789626	1.399435e-23	2.424801e-19	4.948573e-21
50	8066200	7898833	NM_001009999	KDM1A	0.789504	1.437069e-23	2.490009e-19	4.980018e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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