[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1805	7969933	AK126520	BIVM		basic, immunoglobulin-like variable motif containing

Fetching correlation data, please wait...
Getting list of correlations for id 1805.
Getting list of p-values for id 1805.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7969933	8061562	ENST00000364900		0.640304	1.912429e-13	3.313666e-9	3.313666e-9
2	7969933	8047286	ENST00000364779		0.639352	2.129780e-13	3.690270e-9	1.845135e-9
3	7969933	8136471	ENST00000365202		0.631192	5.278474e-13	9.146012e-9	3.048671e-9
4	7969933	7958011	ENST00000363063		0.612401	3.866764e-12	6.699943e-8	1.674986e-8
5	7969933	7913665	ENST00000410831		0.598372	1.572926e-11	2.725409e-7	5.450818e-8
6	7969933	8139201	ENST00000362403		0.593796	2.449784e-11	4.244741e-7	7.074568e-8
7	7969933	7910676			0.593429	2.537856e-11	4.397343e-7	6.281918e-8
8	7969933	7961363	ENST00000384283		0.563208	3.993295e-10	6.919182e-6	8.648977e-7
9	7969933	7942812	ENST00000363276		0.558211	6.134417e-10	1.062910e-5	1.181012e-6
10	7969933	8073511	ENST00000384086		0.555735	7.568732e-10	1.311434e-5	1.311434e-6
11	7969933	8121739	ENST00000410717		0.554719	8.246313e-10	1.428839e-5	1.298944e-6
12	7969933	7898856			0.539053	2.984292e-9	5.170883e-5	4.309069e-6
13	7969933	8027932	NM_001863	COX6B1	0.537797	3.299160e-9	5.716454e-5	4.397272e-6
14	7969933	8046518	ENST00000364555		0.533936	4.478888e-9	7.760570e-5	5.543264e-6
15	7969933	7922299	ENST00000364256		0.521484	1.170049e-8	2.027344e-4	1.351563e-5
16	7969933	7932510	ENST00000364520		0.520274	1.281873e-8	2.221102e-4	1.388189e-5
17	7969933	8023061			0.518320	1.484280e-8	2.571811e-4	1.512830e-5
18	7969933	8100851			0.517421	1.587469e-8	2.750607e-4	1.528115e-5
19	7969933	8154527			0.515022	1.897230e-8	3.287330e-4	1.730174e-5
20	7969933	8159642	NM_006088	TUBB2C	0.513812	2.074516e-8	3.594514e-4	1.797257e-5
21	7969933	8040477	ENST00000363959		0.511677	2.426856e-8	4.205013e-4	2.002387e-5
22	7969933	8139758	NM_016139	CHCHD2	0.511177	2.517333e-8	4.361784e-4	1.982629e-5
23	7969933	8065330	ENST00000411196		0.508864	2.979316e-8	5.162261e-4	2.244461e-5
24	7969933	7945892	ENST00000364409		0.507134	3.376588e-8	5.850614e-4	2.437756e-5
25	7969933	7934753	NM_001099692	EIF5AL1	0.506152	3.624006e-8	6.279315e-4	2.511726e-5
26	7969933	7932883	ENST00000410480		0.505003	3.935614e-8	6.819239e-4	2.622784e-5
27	7969933	7920903	NM_003145	SSR2	0.502183	4.812866e-8	8.339253e-4	3.088612e-5
28	7969933	7928630			0.501030	5.222920e-8	9.049754e-4	3.232055e-5
29	7969933	7958414	NM_014301	ISCU	0.498479	6.251615e-8	1.083217e-3	3.735232e-5
30	7969933	8163271	ENST00000391107		0.497582	6.657294e-8	1.153509e-3	3.845031e-5
31	7969933	8118826	NM_003093	SNRPC	0.496534	7.162798e-8	1.241098e-3	4.003542e-5
32	7969933	7928600	NM_001099692	EIF5AL1	0.495960	7.455368e-8	1.291792e-3	4.036849e-5
33	7969933	7967032			0.494951	7.996999e-8	1.385640e-3	4.198909e-5
34	7969933	8145854	NM_007198	PROSC	0.491746	9.978189e-8	1.728921e-3	5.085061e-5
35	7969933	8037847	NM_004069	AP2S1	0.491643	1.004903e-7	1.741196e-3	4.974845e-5
36	7969933	7950444	ENST00000428553		0.490491	1.087453e-7	1.884230e-3	5.233971e-5
37	7969933	7948606	NM_014206	C11orf10	0.490239	1.106388e-7	1.917039e-3	5.181186e-5
38	7969933	8149638	NM_003974	DOK2	0.489091	1.196509e-7	2.073192e-3	5.455768e-5
39	7969933	7913869	NM_203401	STMN1	0.488171	1.273786e-7	2.207090e-3	5.659204e-5
40	7969933	7978201	NM_006156	NEDD8	0.488116	1.278583e-7	2.215400e-3	5.538501e-5
41	7969933	7913256	NM_005216	DDOST	0.487465	1.336257e-7	2.315333e-3	5.647153e-5
42	7969933	7992021	NM_005861	STUB1	0.485886	1.486771e-7	2.576128e-3	6.133638e-5
43	7969933	8152701	ENST00000410762		0.481744	1.962148e-7	3.399814e-3	7.906544e-5
44	7969933	8008825	NM_024612	DHX40	0.479813	2.230350e-7	3.864527e-3	8.783015e-5
45	7969933	8034454	NM_001930	DHPS	0.479653	2.254004e-7	3.905512e-3	8.678916e-5
46	7969933	8035553	NM_007263	COPE	0.479575	2.265785e-7	3.925927e-3	8.534623e-5
47	7969933	8099082	ENST00000423673		-0.478694	2.401372e-7	4.160858e-3	8.852890e-5
48	7969933	8085263	NM_018447	TMEM111	0.477733	2.558123e-7	4.432460e-3	9.234292e-5
49	7969933	8039413	NM_014931	PPP6R1	0.477211	2.647231e-7	4.586858e-3	9.360934e-5
50	7969933	8160968	NM_013442	STOML2	0.476585	2.758081e-7	4.778928e-3	9.557856e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation