[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1046	7913667	NM_000403	GALE		UDP-galactose-4-epimerase

Fetching correlation data, please wait...
Getting list of correlations for id 1046.
Getting list of p-values for id 1046.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7913667	7991478	NM_001102612	PGPEP1L	0.545706	1.742348e-9	3.018967e-5	3.018967e-5
2	7913667	8135268	NM_001417	EIF4B	-0.537212	3.456406e-9	5.988915e-5	2.994458e-5
3	7913667	8036479	NM_033557	YIF1B	0.507602	3.264213e-8	5.655902e-4	1.885301e-4
4	7913667	7985226	NM_206839	MORF4L1	-0.507530	3.281351e-8	5.685597e-4	1.421399e-4
5	7913667	7965038	ENST00000410227		0.506742	3.473257e-8	6.018113e-4	1.203623e-4
6	7913667	8083523	NM_003875	GMPS	-0.505762	3.727056e-8	6.457869e-4	1.076312e-4
7	7913667	7904927	NM_005267	GJA8	0.504451	4.094490e-8	7.094523e-4	1.013503e-4
8	7913667	8074716	NR_003267	GGT3P	0.501890	4.914189e-8	8.514815e-4	1.064352e-4
9	7913667	8067588	AL117533	NCRNA00029	0.501758	4.960473e-8	8.595012e-4	9.550014e-5
10	7913667	8050894	NM_002254	KIF3C	0.496075	7.395935e-8	1.281494e-3	1.281494e-4
11	7913667	7953763	ENST00000459371		0.495293	7.809523e-8	1.353156e-3	1.230142e-4
12	7913667	8065427	NM_178311	GGTLC1	0.495281	7.816144e-8	1.354303e-3	1.128586e-4
13	7913667	7955305	NM_001652	AQP6	0.494814	8.073380e-8	1.398875e-3	1.076057e-4
14	7913667	7931455	NM_001143757	LRRC27	0.494246	8.397602e-8	1.455053e-3	1.039323e-4
15	7913667	8006542	NM_001030006	AP2B1	-0.493010	9.146712e-8	1.584851e-3	1.056567e-4
16	7913667	8059028	NM_194302	CCDC108	0.491409	1.021142e-7	1.769332e-3	1.105833e-4
17	7913667	8174389	NM_033641	COL4A6	0.490834	1.062180e-7	1.840440e-3	1.082612e-4
18	7913667	7977615	NM_198232	RNASE1	0.489840	1.136955e-7	1.970002e-3	1.094446e-4
19	7913667	8144982	NM_182795	NPM2	0.486629	1.414092e-7	2.450197e-3	1.289577e-4
20	7913667	8007569	AK291924	C17orf53	0.483469	1.748814e-7	3.030170e-3	1.515085e-4
21	7913667	8090366	NM_144639	UROC1	0.483024	1.801615e-7	3.121659e-3	1.486504e-4
22	7913667	8072989	NM_012407	PICK1	0.482668	1.845056e-7	3.196928e-3	1.453149e-4
23	7913667	8074316	NR_003267	GGT3P	0.482186	1.905238e-7	3.301206e-3	1.435307e-4
24	7913667	7922590	AK125993	NCRNA00083	0.480353	2.152060e-7	3.728874e-3	1.553697e-4
25	7913667	8088768			0.480101	2.188297e-7	3.791662e-3	1.516665e-4
26	7913667	8049919	NM_152783	D2HGDH	0.478305	2.463640e-7	4.268749e-3	1.641827e-4
27	7913667	8016414	NM_003726	SKAP1	-0.477173	2.653914e-7	4.598437e-3	1.703125e-4
28	7913667	8084929	NM_152672	OSTalpha	0.476554	2.763770e-7	4.788784e-3	1.710280e-4
29	7913667	7912724	NM_153213	ARHGEF19	0.474520	3.155847e-7	5.468135e-3	1.885564e-4
30	7913667	7963502	NM_175078	KRT77	0.473839	3.298662e-7	5.715592e-3	1.905197e-4
31	7913667	8026407	NM_033025	SYDE1	0.473778	3.311678e-7	5.738144e-3	1.851014e-4
32	7913667	8107644	ENST00000410133		0.471957	3.725816e-7	6.455722e-3	2.017413e-4
33	7913667	7946011	NM_001005238	OR51G2	0.470785	4.017732e-7	6.961524e-3	2.109553e-4
34	7913667	8158825	NM_032728	PPAPDC3	0.469178	4.453752e-7	7.717016e-3	2.269711e-4
35	7913667	8014666	NM_001004334	GPR179	0.468651	4.606334e-7	7.981395e-3	2.280399e-4
36	7913667	7977234	BC041103	C14orf180	0.467723	4.887063e-7	8.467814e-3	2.352171e-4
37	7913667	8040632	ENST00000407684		0.467493	4.958924e-7	8.592328e-3	2.322251e-4
38	7913667	7951987	NM_001077263	TMPRSS13	0.467476	4.964179e-7	8.601433e-3	2.263535e-4
39	7913667	7948973	NM_054108	HRASLS5	0.467285	5.024937e-7	8.706708e-3	2.232489e-4
40	7913667	7944478	NM_024791	PDZD3	0.467089	5.087873e-7	8.815758e-3	2.203939e-4
41	7913667	7956229	NM_001135195	SLC39A5	0.467062	5.096590e-7	8.830862e-3	2.153869e-4
42	7913667	8157818	NM_001045476	WDR38	0.466490	5.284996e-7	9.157313e-3	2.180313e-4
43	7913667	8108199	NM_145282	SLC25A48	0.466344	5.334116e-7	9.242422e-3	2.149401e-4
44	7913667	7914880	NM_005202	COL8A2	0.465592	5.594371e-7	9.693367e-3	2.203038e-4
45	7913667	8093821	ENST00000404649		0.465183	5.740646e-7	9.946818e-3	2.210404e-4
46	7913667	8054338	NM_153836	CREG2	0.465179	5.742031e-7	9.949218e-3	2.162873e-4
47	7913667	7980828	NM_001080414	CCDC88C	-0.464184	6.113566e-7	1.059298e-2	2.253825e-4
48	7913667	8076962	NM_002969	MAPK12	0.463903	6.222580e-7	1.078186e-2	2.246222e-4
49	7913667	7899911	NM_001134734	C1orf94	0.463740	6.286905e-7	1.089332e-2	2.223127e-4
50	7913667	8036176	NM_004646	NPHS1	0.462690	6.714853e-7	1.163483e-2	2.326965e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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