[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1595	7946061	NM_005330	HBE1		hemoglobin, epsilon 1

Fetching correlation data, please wait...
Getting list of correlations for id 1595.
Getting list of p-values for id 1595.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7946061	7898627	NM_001039500	VWA5B1	0.607472	6.380421e-12	1.105536e-7	1.105536e-7
2	7946061	7944882	NM_022370	ROBO3	0.603393	9.594598e-12	1.662456e-7	8.312280e-8
3	7946061	7928126	NM_014431	KIAA1274	0.598423	1.565156e-11	2.711946e-7	9.039821e-8
4	7946061	7914296	NM_001020658	PUM1	-0.588991	3.872434e-11	6.709767e-7	1.677442e-7
5	7946061	8052798	NM_014911	AAK1	-0.588805	3.940928e-11	6.828445e-7	1.365689e-7
6	7946061	8086810	NM_003074	SMARCC1	-0.586523	4.884787e-11	8.463870e-7	1.410645e-7
7	7946061	7946004	NM_001004758	OR51S1	0.585633	5.309058e-11	9.199005e-7	1.314144e-7
8	7946061	7898833	NM_001009999	KDM1A	-0.583322	6.582770e-11	1.140596e-6	1.425746e-7
9	7946061	7975725	NM_019589	YLPM1	-0.582481	7.115576e-11	1.232916e-6	1.369906e-7
10	7946061	8069910	NM_020706	SFRS15	-0.579967	8.968610e-11	1.553991e-6	1.553991e-7
11	7946061	8002729	NR_027264	GLG1	-0.579853	9.062906e-11	1.570330e-6	1.427572e-7
12	7946061	8048639	NM_002191	INHA	0.579697	9.193406e-11	1.592942e-6	1.327451e-7
13	7946061	8100902	NM_032217	ANKRD17	-0.576374	1.244128e-10	2.155700e-6	1.658231e-7
14	7946061	8025053	NM_003811	TNFSF9	0.574716	1.445065e-10	2.503864e-6	1.788474e-7
15	7946061	8025697	NM_012218	ILF3	-0.573374	1.630150e-10	2.824560e-6	1.883040e-7
16	7946061	8051075	NM_001521	GTF3C2	-0.570114	2.179924e-10	3.777154e-6	2.360721e-7
17	7946061	8116033	NM_000505	F12	0.569714	2.258509e-10	3.913319e-6	2.301952e-7
18	7946061	7952335	NR_003125	SNORD14E	-0.568669	2.477125e-10	4.292114e-6	2.384508e-7
19	7946061	7911413	NM_003327	TNFRSF4	0.568010	2.625233e-10	4.548741e-6	2.394074e-7
20	7946061	7897890	NM_015378	VPS13D	-0.566470	3.005527e-10	5.207677e-6	2.603839e-7
21	7946061	7991598	BC067846	SNRPA1	-0.564601	3.538050e-10	6.130378e-6	2.919228e-7
22	7946061	8172876	NM_006306	SMC1A	-0.564441	3.587891e-10	6.216740e-6	2.825791e-7
23	7946061	7969794	AY358798	LOC100132099	-0.564343	3.618329e-10	6.269478e-6	2.725860e-7
24	7946061	8108954	NM_006706	TCERG1	-0.564123	3.688367e-10	6.390834e-6	2.662847e-7
25	7946061	7944147	NM_001680	FXYD2	0.563316	3.955839e-10	6.854283e-6	2.741713e-7
26	7946061	8088776	NM_032682	FOXP1	-0.560127	5.207543e-10	9.023111e-6	3.470427e-7
27	7946061	7902269	NM_004768	SRSF11	-0.557911	6.293331e-10	1.090446e-5	4.038687e-7
28	7946061	8074647	NM_058004	PI4KA	-0.556343	7.189367e-10	1.245702e-5	4.448934e-7
29	7946061	7934553	NM_032772	ZNF503	0.555409	7.780112e-10	1.348060e-5	4.648483e-7
30	7946061	8087271	NM_017730	QRICH1	-0.553687	8.993729e-10	1.558343e-5	5.194478e-7
31	7946061	8051464	NM_019024	HEATR5B	-0.551909	1.043763e-9	1.808529e-5	5.833963e-7
32	7946061	8054092	NM_015348	TMEM131	-0.550328	1.190480e-9	2.062745e-5	6.446078e-7
33	7946061	8032312	NM_138813	ATP8B3	0.548528	1.381805e-9	2.394253e-5	7.255311e-7
34	7946061	8153322	NM_015193	ARC	0.547913	1.453720e-9	2.518861e-5	7.408413e-7
35	7946061	8007112	NM_001146041	KRTAP4-9	0.547664	1.483755e-9	2.570902e-5	7.345436e-7
36	7946061	7976876	NM_001376	DYNC1H1	-0.545979	1.703814e-9	2.952199e-5	8.200553e-7
37	7946061	8019699	NM_033059	KRTAP4-11	0.544908	1.859735e-9	3.222362e-5	8.709087e-7
38	7946061	7900336	AY527403		-0.544577	1.910564e-9	3.310435e-5	8.711670e-7
39	7946061	7921462	NM_001013661	VSIG8	0.543659	2.058667e-9	3.567052e-5	9.146288e-7
40	7946061	8123334	NR_027284	LOC441177	0.541985	2.357646e-9	4.085094e-5	1.021273e-6
41	7946061	7970241	NM_000504	F10	0.540299	2.700539e-9	4.679225e-5	1.141274e-6
42	7946061	7944223	NM_005933	MLL	-0.540142	2.734822e-9	4.738627e-5	1.128244e-6
43	7946061	7914791	NM_005066	SFPQ	-0.540007	2.764578e-9	4.790184e-5	1.113996e-6
44	7946061	8165705	NC_001807		-0.539706	2.832188e-9	4.907333e-5	1.115303e-6
45	7946061	7996281	NM_001136106	BEAN	0.537741	3.313820e-9	5.741856e-5	1.275968e-6
46	7946061	8038598	NM_016148	SHANK1	0.537214	3.455774e-9	5.987820e-5	1.301700e-6
47	7946061	8067011	NM_015339	ADNP	-0.536583	3.633395e-9	6.295584e-5	1.339486e-6
48	7946061	8053909	NM_014014	SNRNP200	-0.536199	3.745993e-9	6.490682e-5	1.352225e-6
49	7946061	8015221	NM_033059	KRTAP4-11	0.535965	3.816042e-9	6.612056e-5	1.349399e-6
50	7946061	8137517	NM_024012	HTR5A	0.535698	3.897529e-9	6.753248e-5	1.350650e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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