[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5970	8157638	NM_138777	MRRF		mitochondrial ribosome recycling factor

Fetching correlation data, please wait...
Getting list of correlations for id 5970.
Getting list of p-values for id 5970.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8157638	8072946	NM_016091	EIF3L	0.628421	7.140006e-13	1.237149e-8	1.237149e-8
2	8157638	8041149	NM_015131	WDR43	0.624702	1.066009e-12	1.847074e-8	9.235371e-9
3	8157638	8128767	NM_014797	ZBTB24	0.624205	1.124223e-12	1.947941e-8	6.493135e-9
4	8157638	8109821	NM_006013	RPL10	0.622617	1.331534e-12	2.307149e-8	5.767871e-9
5	8157638	7961964	NM_018164	C12orf11	0.620668	1.636761e-12	2.836015e-8	5.672031e-9
6	8157638	7901804	NM_176877	INADL	0.620117	1.734630e-12	3.005593e-8	5.009321e-9
7	8157638	8050367	NM_015909	NBAS	0.618292	2.100973e-12	3.640355e-8	5.200508e-9
8	8157638	8107458	NM_016144	COMMD10	0.616556	2.517944e-12	4.362841e-8	5.453551e-9
9	8157638	8145922	NM_015214	DDHD2	0.616535	2.523463e-12	4.372404e-8	4.858227e-9
10	8157638	8042737	NM_015120	ALMS1	0.615879	2.701463e-12	4.680825e-8	4.680825e-9
11	8157638	8142143	NM_006348	COG5	0.614418	3.142530e-12	5.445063e-8	4.950057e-9
12	8157638	8142912	NM_032842	TMEM209	0.613350	3.507811e-12	6.077985e-8	5.064987e-9
13	8157638	8027292	NM_133473	ZNF431	0.610315	4.784878e-12	8.290758e-8	6.377506e-9
14	8157638	7996012	NM_012106	ARL2BP	0.608076	6.003783e-12	1.040276e-7	7.430539e-9
15	8157638	8152782	NM_014846	KIAA0196	0.605890	7.479525e-12	1.295977e-7	8.639848e-9
16	8157638	8033789	NM_001008727	ZNF121	0.604740	8.391050e-12	1.453917e-7	9.086983e-9
17	8157638	7957890	NM_014503	UTP20	0.603748	9.262377e-12	1.604892e-7	9.440541e-9
18	8157638	7969881	NM_003291	TPP2	0.602186	1.081392e-11	1.873728e-7	1.040960e-8
19	8157638	7925130	NM_005646	TARBP1	0.601902	1.112165e-11	1.927049e-7	1.014236e-8
20	8157638	7925364	NM_018072	HEATR1	0.601737	1.130501e-11	1.958819e-7	9.794095e-9
21	8157638	7915995	NM_007051	FAF1	0.600845	1.234383e-11	2.138815e-7	1.018483e-8
22	8157638	8162850	NM_017746	TEX10	0.600365	1.294025e-11	2.242157e-7	1.019162e-8
23	8157638	7996947	NM_030579	CYB5B	0.598983	1.481747e-11	2.567423e-7	1.116271e-8
24	8157638	8175420	NM_002139	RBMX	0.598108	1.613972e-11	2.796530e-7	1.165221e-8
25	8157638	7972557	NM_004951	GPR183	0.597440	1.722498e-11	2.984571e-7	1.193829e-8
26	8157638	8043861	NM_015904	EIF5B	0.597207	1.761870e-11	3.052793e-7	1.174151e-8
27	8157638	8051882	NM_133259	LRPPRC	0.596383	1.908707e-11	3.307217e-7	1.224895e-8
28	8157638	8102950	NM_003866	INPP4B	0.596194	1.944002e-11	3.368371e-7	1.202990e-8
29	8157638	7908777	ENST00000412093		0.596160	1.950331e-11	3.379339e-7	1.165289e-8
30	8157638	7979611	NM_006977	ZBTB25	0.595570	2.064927e-11	3.577899e-7	1.192633e-8
31	8157638	8129193	NM_001042475	C6orf204	0.594320	2.329555e-11	4.036419e-7	1.302071e-8
32	8157638	7972003	NM_007249	KLF12	0.592264	2.837293e-11	4.916178e-7	1.536306e-8
33	8157638	7919251	NM_016334	GPR89B	0.590957	3.213843e-11	5.568625e-7	1.687462e-8
34	8157638	7947138	NM_022725	FANCF	0.590556	3.338810e-11	5.785156e-7	1.701516e-8
35	8157638	7914617	NM_013411	AK2	0.590002	3.519042e-11	6.097445e-7	1.742127e-8
36	8157638	8055060	NM_018383	WDR33	0.590001	3.519286e-11	6.097868e-7	1.693852e-8
37	8157638	8108954	NM_006706	TCERG1	0.589862	3.565869e-11	6.178582e-7	1.669887e-8
38	8157638	8128472	NM_006828	ASCC3	0.589832	3.576113e-11	6.196330e-7	1.630613e-8
39	8157638	8043251	NM_017952	PTCD3	0.589756	3.602050e-11	6.241272e-7	1.600326e-8
40	8157638	7904930	NM_016334	GPR89B	0.587847	4.313806e-11	7.474531e-7	1.868633e-8
41	8157638	7955425	NM_005171	ATF1	0.587495	4.459022e-11	7.726148e-7	1.884426e-8
42	8157638	7968898	BC039586	KIAA1704	0.587143	4.608759e-11	7.985597e-7	1.901333e-8
43	8157638	8156718	NM_002486	NCBP1	0.586509	4.891379e-11	8.475292e-7	1.970998e-8
44	8157638	7903010	NM_000969	RPL5	0.586221	5.025050e-11	8.706905e-7	1.978842e-8
45	8157638	7956658	NM_004731	SLC16A7	0.585857	5.199283e-11	9.008797e-7	2.001955e-8
46	8157638	8021924	NM_005131	THOC1	0.585682	5.284679e-11	9.156764e-7	1.990601e-8
47	8157638	8048120	NM_004044	ATIC	0.585123	5.567688e-11	9.647133e-7	2.052582e-8
48	8157638	7927955	NM_015634	KIAA1279	0.584811	5.732450e-11	9.932616e-7	2.069295e-8
49	8157638	8162313	NM_013417	IARS	0.584603	5.844477e-11	1.012673e-6	2.066679e-8
50	8157638	8089954	NM_001023570	IQCB1	0.584387	5.963072e-11	1.033221e-6	2.066443e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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