[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16528	8105935	AK302597	POM121L8P		POM121 membrane glycoprotein-like 8 pseudogene
16592	8105989	AK302597	POM121L8P		POM121 membrane glycoprotein-like 8 pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 16528.
Getting list of p-values for id 16528.
1 of 2 done.
Getting list of correlations for id 16592.
Getting list of p-values for id 16592.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8105989	8112476	AK296222		0.995392	1.038534e-106	3.598936e-102	3.598936e-102
2	8105935	8105989	AK302597	POM121L8P	0.993023	1.864204e-97	6.460211e-93	3.230106e-93
3	8105989	8105935	AK302597	POM121L8P	0.993023	1.864204e-97	6.460211e-93	2.153404e-93
4	8105935	8112476	AK296222		0.989267	7.307708e-88	2.532413e-83	6.331033e-84
5	8105989	8105987	AK296222		0.949397	1.292921e-53	4.480489e-49	8.960979e-50
6	8105935	8105987	AK296222		0.940999	2.836885e-50	9.830941e-46	1.638490e-46
7	8105989	8112519	AK296222		0.919624	1.347840e-43	4.670803e-39	6.672576e-40
8	8105935	8112519	AK296222		0.911697	1.395175e-41	4.834839e-37	6.043548e-38
9	8105935	8102862	NM_018717	MAML3	0.435412	3.450321e-6	1.195674e-1	1.328527e-2
10	8105989	8102862	NM_018717	MAML3	0.411761	1.277018e-5	4.425378e-1	4.425378e-2
11	8105989	8164398	NM_004486	GOLGA2	0.408218	1.540679e-5	5.339068e-1	4.853698e-2
12	8105935	8164398	NM_004486	GOLGA2	0.403858	1.935380e-5	6.706867e-1	5.589055e-2
13	8105989	8177674	NM_001515	GTF2H2	0.395195	3.016353e-5	1.045287e+0	8.040670e-2
14	8105935	8177674	NM_001515	GTF2H2	0.393723	3.248711e-5	1.125808e+0	8.041489e-2
15	8105935	7967002	NM_001080855	PXN	0.390776	3.765024e-5	1.304731e+0	8.698209e-2
16	8105989	7967002	NM_001080855	PXN	0.387100	4.516513e-5	1.565152e+0	9.782202e-2
17	8105989	8112538	NM_001515	GTF2H2	0.383149	5.479143e-5	1.898742e+0	1.116907e-1
18	8105989	8177507	NM_001515	GTF2H2	0.383149	5.479143e-5	1.898742e+0	1.054857e-1
19	8105935	8108217	NM_000358	TGFBI	0.381591	5.909052e-5	2.047723e+0	1.077749e-1
20	8105989	8105918	NM_001515	GTF2H2	0.381158	6.033914e-5	2.090993e+0	1.045496e-1
21	8105935	8051396	NM_021209	NLRC4	0.380938	6.098395e-5	2.113338e+0	1.006351e-1
22	8105935	8112538	NM_001515	GTF2H2	0.380566	6.208573e-5	2.151519e+0	9.779632e-2
23	8105935	8177507	NM_001515	GTF2H2	0.380566	6.208573e-5	2.151519e+0	9.354430e-2
24	8105989	7967021	BC052611	PXN	0.380359	6.270813e-5	2.173088e+0	9.054532e-2
25	8105989	8105970	NM_001515	GTF2H2	0.380042	6.367354e-5	2.206543e+0	8.826172e-2
26	8105935	8105918	NM_001515	GTF2H2	0.378898	6.726893e-5	2.331138e+0	8.965914e-2
27	8105989	8071411	NR_024592	POM121L4P	0.378555	6.838414e-5	2.369784e+0	8.776978e-2
28	8105989	8108217	NM_000358	TGFBI	0.377990	7.025772e-5	2.434711e+0	8.695396e-2
29	8105935	8105970	NM_001515	GTF2H2	0.374958	8.115122e-5	2.812214e+0	9.697291e-2
30	8105989	8051396	NM_021209	NLRC4	0.366398	1.209980e-4	4.193063e+0	1.397688e-1
31	8105935	7967021	BC052611	PXN	0.364997	1.290393e-4	4.471728e+0	1.442493e-1
32	8105989	7926037	NM_004566	PFKFB3	0.363586	1.376319e-4	4.769497e+0	1.490468e-1
33	8105989	7950671	NM_080491	GAB2	0.363264	1.396672e-4	4.840029e+0	1.466675e-1
34	8105935	7950671	NM_080491	GAB2	0.360079	1.613479e-4	5.591350e+0	1.644515e-1
35	8105935	8143070	NM_014149	WDR91	0.357856	1.782887e-4	6.178418e+0	1.765262e-1
36	8105935	7926037	NM_004566	PFKFB3	0.357440	1.816327e-4	6.294298e+0	1.748416e-1
37	8105935	8110106	NM_001131055	HRH2	0.355686	1.963974e-4	6.805957e+0	1.839448e-1
38	8105935	8071411	NR_024592	POM121L4P	0.355084	2.017137e-4	6.990186e+0	1.839523e-1
39	8105935	8014603	NM_001123391	TBC1D3	0.354669	2.054618e-4	7.120075e+0	1.825660e-1
40	8105989	8143070	NM_014149	WDR91	0.354038	2.112789e-4	7.321658e+0	1.830415e-1
41	8105989	8071168	NR_024593	POM121L10P	0.353001	2.211656e-4	7.664272e+0	1.869335e-1
42	8105989	8118863	NM_015245	ANKS1A	0.352982	2.213521e-4	7.670735e+0	1.826365e-1
43	8105935	8093398	NM_006315	PCGF3	0.351369	2.375991e-4	8.233760e+0	1.914828e-1
44	8105935	7949060	NM_138689	PPP1R14B	0.351094	2.404780e-4	8.333525e+0	1.893983e-1
45	8105989	8179595	NM_001470	GABBR1	0.350511	2.466806e-4	8.548468e+0	1.899660e-1
46	8105935	8179595	NM_001470	GABBR1	0.350245	2.495630e-4	8.648357e+0	1.880078e-1
47	8105989	8093398	NM_006315	PCGF3	0.350236	2.496624e-4	8.651800e+0	1.840808e-1
48	8105989	8110106	NM_001131055	HRH2	0.349571	2.570058e-4	8.906278e+0	1.855475e-1
49	8105989	8154868			0.348507	2.691675e-4	9.327732e+0	1.903619e-1
50	8105989	8092134	NM_002662	PLD1	0.346072	2.990208e-4	1.036227e+1	2.072454e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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